Strain Fitness in Shewanella amazonensis SB2B

Strain Fitness in Shewanella amazonensis SB2B around Sama_0849

Experiment: 5-Hydroxymethylfurfural 20 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 20 mM
					remove
1,034,801	+	anmK	Sama_0848	0.14	-1.0
1,034,801	+	anmK	Sama_0848	0.14	-1.9
1,034,810	+	anmK	Sama_0848	0.15	+0.5
1,034,853	-	anmK	Sama_0848	0.19	-0.4
1,034,853	-	anmK	Sama_0848	0.19	+0.2
1,034,874	+	anmK	Sama_0848	0.21	-1.0
1,034,874	+	anmK	Sama_0848	0.21	-0.3
1,034,874	+	anmK	Sama_0848	0.21	-1.4
1,034,875	-	anmK	Sama_0848	0.21	+0.8
1,034,875	-	anmK	Sama_0848	0.21	+0.2
1,034,875	-	anmK	Sama_0848	0.21	-0.0
1,034,875	-	anmK	Sama_0848	0.21	-0.6
1,034,934	+	anmK	Sama_0848	0.26	-0.0
1,034,935	-	anmK	Sama_0848	0.26	-1.2
1,035,043	+	anmK	Sama_0848	0.36	+0.6
1,035,043	+	anmK	Sama_0848	0.36	-0.7
1,035,053	+	anmK	Sama_0848	0.37	-0.5
1,035,053	+	anmK	Sama_0848	0.37	-0.1
1,035,054	-	anmK	Sama_0848	0.37	-0.0
1,035,058	+	anmK	Sama_0848	0.37	-2.3
1,035,059	-	anmK	Sama_0848	0.37	-1.7
1,035,059	-	anmK	Sama_0848	0.37	-0.6
1,035,089	+	anmK	Sama_0848	0.40	-0.4
1,035,089	+	anmK	Sama_0848	0.40	-1.0
1,035,090	-	anmK	Sama_0848	0.40	-0.9
1,035,090	-	anmK	Sama_0848	0.40	-1.6
1,035,102	-	anmK	Sama_0848	0.41	-2.5
1,035,147	+	anmK	Sama_0848	0.45	+0.6
1,035,148	-	anmK	Sama_0848	0.45	-0.5
1,035,156	+	anmK	Sama_0848	0.46	-1.6
1,035,156	+	anmK	Sama_0848	0.46	-2.2
1,035,157	-	anmK	Sama_0848	0.46	-0.8
1,035,168	+	anmK	Sama_0848	0.47	-0.6
1,035,168	+	anmK	Sama_0848	0.47	-0.0
1,035,168	+	anmK	Sama_0848	0.47	-2.0
1,035,168	+	anmK	Sama_0848	0.47	-1.4
1,035,168	+	anmK	Sama_0848	0.47	+0.4
1,035,168	+	anmK	Sama_0848	0.47	-1.0
1,035,169	-	anmK	Sama_0848	0.47	+0.7
1,035,204	+	anmK	Sama_0848	0.50	+0.8
1,035,205	-	anmK	Sama_0848	0.50	-0.7
1,035,236	+	anmK	Sama_0848	0.53	-1.0
1,035,237	-	anmK	Sama_0848	0.53	-1.6
1,035,245	+	anmK	Sama_0848	0.54	+0.2
1,035,252	+	anmK	Sama_0848	0.55	+0.3
1,035,252	+	anmK	Sama_0848	0.55	-0.3
1,035,252	+	anmK	Sama_0848	0.55	+1.0
1,035,252	+	anmK	Sama_0848	0.55	-1.0
1,035,253	-	anmK	Sama_0848	0.55	-0.5
1,035,253	-	anmK	Sama_0848	0.55	+1.0
1,035,253	-	anmK	Sama_0848	0.55	-0.5
1,035,253	-	anmK	Sama_0848	0.55	-0.5
1,035,284	+	anmK	Sama_0848	0.57	-1.0
1,035,345	-	anmK	Sama_0848	0.63	-0.5
1,035,345	-	anmK	Sama_0848	0.63	-0.7
1,035,378	-	anmK	Sama_0848	0.66	-0.8
1,035,378	-	anmK	Sama_0848	0.66	-0.1
1,035,453	-	anmK	Sama_0848	0.73	-1.2
1,035,494	+	anmK	Sama_0848	0.76	-0.0
1,035,494	+	anmK	Sama_0848	0.76	-1.0
1,035,494	+	anmK	Sama_0848	0.76	-0.9
1,035,494	+	anmK	Sama_0848	0.76	-2.4
1,035,494	+	anmK	Sama_0848	0.76	-1.7
1,035,494	+	anmK	Sama_0848	0.76	+0.6
1,035,494	+	anmK	Sama_0848	0.76	-1.0
1,035,494	+	anmK	Sama_0848	0.76	-1.9
1,035,494	+	anmK	Sama_0848	0.76	-1.3
1,035,494	+	anmK	Sama_0848	0.76	+0.1
1,035,495	-	anmK	Sama_0848	0.76	+0.4
1,035,495	-	anmK	Sama_0848	0.76	-0.0
1,035,495	-	anmK	Sama_0848	0.76	-0.9
1,035,495	-	anmK	Sama_0848	0.76	-0.4
1,035,495	-	anmK	Sama_0848	0.76	+0.1
1,035,495	-	anmK	Sama_0848	0.76	-1.2
1,035,495	-	anmK	Sama_0848	0.76	+0.4
1,035,495	-	anmK	Sama_0848	0.76	-0.1
1,035,495	-	anmK	Sama_0848	0.76	-0.0
1,035,495	-	anmK	Sama_0848	0.76	-0.2
1,035,495	-	anmK	Sama_0848	0.76	-1.0
1,035,495	-	anmK	Sama_0848	0.76	-1.5
1,035,495	-	anmK	Sama_0848	0.76	+2.5
1,035,498	+	anmK	Sama_0848	0.77	+0.6
1,035,498	+	anmK	Sama_0848	0.77	-0.5
1,035,498	+	anmK	Sama_0848	0.77	+0.4
1,035,498	+	anmK	Sama_0848	0.77	-0.3
1,035,498	+	anmK	Sama_0848	0.77	-1.0
1,035,499	-	anmK	Sama_0848	0.77	-0.3
1,035,499	-	anmK	Sama_0848	0.77	+0.5
1,035,499	-	anmK	Sama_0848	0.77	-0.3
1,035,499	-	anmK	Sama_0848	0.77	-0.9
1,035,499	-	anmK	Sama_0848	0.77	-1.8
1,035,604	-	anmK	Sama_0848	0.86	-0.7
1,035,713	+				+0.4
1,035,802	+				-0.3
1,035,803	-				-0.6
1,035,895	+		Sama_0849	0.10	-1.3
1,035,911	+		Sama_0849	0.11	-0.7
1,035,911	+		Sama_0849	0.11	+0.6
1,035,912	-		Sama_0849	0.12	-1.1
1,035,926	-		Sama_0849	0.13	+0.2
1,035,933	+		Sama_0849	0.13	-2.2
1,035,934	-		Sama_0849	0.13	-1.4
1,035,934	-		Sama_0849	0.13	-0.5
1,035,934	-		Sama_0849	0.13	-1.7
1,035,983	-		Sama_0849	0.17	-0.5
1,036,041	+		Sama_0849	0.21	-1.1
1,036,041	+		Sama_0849	0.21	-1.0
1,036,041	+		Sama_0849	0.21	+0.6
1,036,041	+		Sama_0849	0.21	-0.0
1,036,041	+		Sama_0849	0.21	-0.4
1,036,041	+		Sama_0849	0.21	-1.8
1,036,041	+		Sama_0849	0.21	-2.7
1,036,042	-		Sama_0849	0.21	-1.0
1,036,042	-		Sama_0849	0.21	+0.8
1,036,053	+		Sama_0849	0.22	-0.0
1,036,053	+		Sama_0849	0.22	+1.0
1,036,053	+		Sama_0849	0.22	+2.3
1,036,053	+		Sama_0849	0.22	-1.3
1,036,053	+		Sama_0849	0.22	-0.8
1,036,053	+		Sama_0849	0.22	-0.7
1,036,053	+		Sama_0849	0.22	-1.0
1,036,054	-		Sama_0849	0.22	-1.3
1,036,054	-		Sama_0849	0.22	-0.5
1,036,054	-		Sama_0849	0.22	-0.8
1,036,054	-		Sama_0849	0.22	-2.2
1,036,054	-		Sama_0849	0.22	-3.3
1,036,080	+		Sama_0849	0.24	+0.1
1,036,080	+		Sama_0849	0.24	+1.0
1,036,080	+		Sama_0849	0.24	-1.9
1,036,080	+		Sama_0849	0.24	-0.3
1,036,080	+		Sama_0849	0.24	-0.0
1,036,080	+		Sama_0849	0.24	+0.2
1,036,081	-		Sama_0849	0.24	-1.5
1,036,081	-		Sama_0849	0.24	-0.9
1,036,092	+		Sama_0849	0.24	-1.7
1,036,092	+		Sama_0849	0.24	-1.6
1,036,092	+		Sama_0849	0.24	-1.0
1,036,092	+		Sama_0849	0.24	-1.2
1,036,101	+		Sama_0849	0.25	-0.9
1,036,112	+		Sama_0849	0.26	-0.2
1,036,113	-		Sama_0849	0.26	-0.5
1,036,139	-		Sama_0849	0.28	-2.6
1,036,160	+		Sama_0849	0.29	-0.6
1,036,161	-		Sama_0849	0.29	-0.6
1,036,161	-		Sama_0849	0.29	-0.6
1,036,161	-		Sama_0849	0.29	-1.3
1,036,164	+		Sama_0849	0.30	+0.7
1,036,164	+		Sama_0849	0.30	-1.0
1,036,164	+		Sama_0849	0.30	-1.9
1,036,164	+		Sama_0849	0.30	+0.2
1,036,164	+		Sama_0849	0.30	-1.2
1,036,165	-		Sama_0849	0.30	+0.2
1,036,165	-		Sama_0849	0.30	+0.1
1,036,239	+		Sama_0849	0.35	-1.4
1,036,299	+		Sama_0849	0.39	-0.3
1,036,302	+		Sama_0849	0.40	-0.0
1,036,302	+		Sama_0849	0.40	-0.3
1,036,302	+		Sama_0849	0.40	-0.2
1,036,302	+		Sama_0849	0.40	-0.3
1,036,302	+		Sama_0849	0.40	-0.8
1,036,303	-		Sama_0849	0.40	+0.3
1,036,303	-		Sama_0849	0.40	-1.2
1,036,306	+		Sama_0849	0.40	-0.1
1,036,306	+		Sama_0849	0.40	-2.3
1,036,306	+		Sama_0849	0.40	-0.2
1,036,317	+		Sama_0849	0.41	-2.4
1,036,333	-		Sama_0849	0.42	-0.4
1,036,333	-		Sama_0849	0.42	-1.0
1,036,352	-		Sama_0849	0.43	-1.5
1,036,401	+		Sama_0849	0.47	-0.6
1,036,401	+		Sama_0849	0.47	-1.0
1,036,402	-		Sama_0849	0.47	-0.5
1,036,402	-		Sama_0849	0.47	-1.9
1,036,429	+		Sama_0849	0.49	-1.4
1,036,429	+		Sama_0849	0.49	-0.0
1,036,430	-		Sama_0849	0.49	-1.0
1,036,507	+		Sama_0849	0.54	-0.4
1,036,507	+		Sama_0849	0.54	-2.2
1,036,507	+		Sama_0849	0.54	-1.2
1,036,589	+		Sama_0849	0.60	-1.6
1,036,590	-		Sama_0849	0.60	-0.3
1,036,590	-		Sama_0849	0.60	+0.2
1,036,590	-		Sama_0849	0.60	-0.0
1,036,829	+		Sama_0849	0.78	+0.7
1,036,829	+		Sama_0849	0.78	+0.5
1,036,844	+		Sama_0849	0.79	-0.3
1,036,922	+		Sama_0849	0.84	-1.1
1,036,922	+		Sama_0849	0.84	+0.5
1,036,922	+		Sama_0849	0.84	+0.4
1,036,923	-		Sama_0849	0.84	-0.7
1,036,923	-		Sama_0849	0.84	-1.8
1,036,928	+		Sama_0849	0.85	-0.1
1,036,928	+		Sama_0849	0.85	-0.2
1,036,928	+		Sama_0849	0.85	-0.4
1,036,928	+		Sama_0849	0.85	-1.4
1,036,928	+		Sama_0849	0.85	-1.2
1,036,928	+		Sama_0849	0.85	-0.9
1,036,928	+		Sama_0849	0.85	-1.6
1,036,928	+		Sama_0849	0.85	-0.7
1,036,928	+		Sama_0849	0.85	-1.1
1,036,928	+		Sama_0849	0.85	-0.0
1,036,929	-		Sama_0849	0.85	-0.7
1,036,929	-		Sama_0849	0.85	-0.6
1,036,929	-		Sama_0849	0.85	-0.6
1,036,929	-		Sama_0849	0.85	+0.4
1,036,929	-		Sama_0849	0.85	+0.3
1,036,929	-		Sama_0849	0.85	-1.5
1,036,929	-		Sama_0849	0.85	+0.0
1,036,929	-		Sama_0849	0.85	+0.3
1,036,929	-		Sama_0849	0.85	-1.9
1,036,985	-		Sama_0849	0.89	-0.8
1,037,073	-				-1.5
1,037,125	+				-1.6
1,037,125	+				-0.0
1,037,125	+				+0.5
1,037,126	-				-0.6
1,037,129	-				-0.4
1,037,129	-				-0.5
1,037,182	+				-1.3
1,037,182	+				-0.0
1,037,182	+				-0.7
1,037,183	-				-0.6
1,037,183	-				-0.8
1,037,187	+				-0.4
1,037,187	+				-0.4
1,037,187	+				-0.4
1,037,187	+				-0.2
1,037,187	+				+0.0
1,037,188	-				+1.0
1,037,217	+				-0.9
1,037,217	+				-0.6
1,037,217	+				-0.2
1,037,217	+				+1.0
1,037,217	+				+1.4
1,037,222	+				+1.0
1,037,222	+				+0.7
1,037,222	+				-0.4
1,037,222	+				+0.9
1,037,222	+				+0.6
1,037,222	+				-0.5
1,037,222	+				+0.4
1,037,222	+				-0.6
1,037,222	+				-1.0
1,037,222	+				+0.4

Or see this region's nucleotide sequence