Experiment: 5-Hydroxymethylfurfural 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0739 and Sama_0740 are separated by 115 nucleotides Sama_0740 and Sama_0741 are separated by 60 nucleotides Sama_0741 and Sama_0742 are separated by 225 nucleotides
Sama_0739: Sama_0739 - hypothetical protein (RefSeq), at 906,748 to 907,623
_0739
Sama_0740: Sama_0740 - monofunctional biosynthetic peptidoglycan transglycosylase (RefSeq), at 907,739 to 908,476
_0740
Sama_0741: Sama_0741 - hemolysin-coregulated protein (uncharacterized)-like protein (RefSeq), at 908,537 to 909,067
_0741
Sama_0742: Sama_0742 - hypothetical protein (RefSeq), at 909,293 to 909,634
_0742
Position (kb) 907
908
909 Strain fitness (log2 ratio) -2
-1
0
1
2 at 906.747 kb on + strand at 906.747 kb on + strand at 906.747 kb on + strand at 906.747 kb on + strand at 906.748 kb on - strand at 906.748 kb on - strand at 906.758 kb on + strand at 906.758 kb on + strand at 906.758 kb on + strand at 906.758 kb on + strand at 906.759 kb on - strand at 906.934 kb on + strand, within Sama_0739 at 906.935 kb on - strand, within Sama_0739 at 906.996 kb on + strand, within Sama_0739 at 907.020 kb on + strand, within Sama_0739 at 907.020 kb on + strand, within Sama_0739 at 907.041 kb on + strand, within Sama_0739 at 907.116 kb on + strand, within Sama_0739 at 907.116 kb on + strand, within Sama_0739 at 907.126 kb on + strand, within Sama_0739 at 907.126 kb on + strand, within Sama_0739 at 907.126 kb on + strand, within Sama_0739 at 907.127 kb on - strand, within Sama_0739 at 907.127 kb on - strand, within Sama_0739 at 907.164 kb on + strand, within Sama_0739 at 907.164 kb on + strand, within Sama_0739 at 907.164 kb on + strand, within Sama_0739 at 907.164 kb on + strand, within Sama_0739 at 907.165 kb on - strand, within Sama_0739 at 907.165 kb on - strand, within Sama_0739 at 907.236 kb on - strand, within Sama_0739 at 907.236 kb on - strand, within Sama_0739 at 907.276 kb on + strand, within Sama_0739 at 907.277 kb on - strand, within Sama_0739 at 907.289 kb on + strand, within Sama_0739 at 907.289 kb on + strand, within Sama_0739 at 907.289 kb on + strand, within Sama_0739 at 907.289 kb on + strand, within Sama_0739 at 907.290 kb on - strand, within Sama_0739 at 907.290 kb on - strand, within Sama_0739 at 907.290 kb on - strand, within Sama_0739 at 907.366 kb on + strand, within Sama_0739 at 907.367 kb on - strand, within Sama_0739 at 907.367 kb on - strand, within Sama_0739 at 907.379 kb on + strand, within Sama_0739 at 907.379 kb on + strand, within Sama_0739 at 907.380 kb on - strand, within Sama_0739 at 907.485 kb on + strand, within Sama_0739 at 907.518 kb on + strand, within Sama_0739 at 907.540 kb on + strand at 907.540 kb on + strand at 907.540 kb on + strand at 907.541 kb on - strand at 907.600 kb on + strand at 907.601 kb on - strand at 907.601 kb on - strand at 907.601 kb on - strand at 907.607 kb on + strand at 907.608 kb on - strand at 907.608 kb on - strand at 907.608 kb on - strand at 907.608 kb on - strand at 907.622 kb on - strand at 907.636 kb on + strand at 907.649 kb on - strand at 907.659 kb on + strand at 907.659 kb on + strand at 907.659 kb on + strand at 907.660 kb on - strand at 907.660 kb on - strand at 907.737 kb on + strand at 907.738 kb on - strand at 907.790 kb on - strand at 907.790 kb on - strand at 907.790 kb on - strand at 907.790 kb on - strand at 907.790 kb on - strand at 907.790 kb on - strand at 907.845 kb on + strand, within Sama_0740 at 907.845 kb on + strand, within Sama_0740 at 907.846 kb on - strand, within Sama_0740 at 907.875 kb on + strand, within Sama_0740 at 907.875 kb on + strand, within Sama_0740 at 907.937 kb on - strand, within Sama_0740 at 907.984 kb on + strand, within Sama_0740 at 907.984 kb on + strand, within Sama_0740 at 907.984 kb on + strand, within Sama_0740 at 907.984 kb on + strand, within Sama_0740 at 907.984 kb on + strand, within Sama_0740 at 907.984 kb on + strand, within Sama_0740 at 907.984 kb on + strand, within Sama_0740 at 907.985 kb on - strand, within Sama_0740 at 907.985 kb on - strand, within Sama_0740 at 907.985 kb on - strand, within Sama_0740 at 907.985 kb on - strand, within Sama_0740 at 907.985 kb on - strand, within Sama_0740 at 907.985 kb on - strand, within Sama_0740 at 908.023 kb on + strand, within Sama_0740 at 908.023 kb on + strand, within Sama_0740 at 908.023 kb on + strand, within Sama_0740 at 908.024 kb on - strand, within Sama_0740 at 908.024 kb on - strand, within Sama_0740 at 908.024 kb on - strand, within Sama_0740 at 908.107 kb on + strand, within Sama_0740 at 908.108 kb on - strand, within Sama_0740 at 908.108 kb on - strand, within Sama_0740 at 908.167 kb on + strand, within Sama_0740 at 908.167 kb on + strand, within Sama_0740 at 908.208 kb on + strand, within Sama_0740 at 908.208 kb on + strand, within Sama_0740 at 908.237 kb on + strand, within Sama_0740 at 908.237 kb on + strand, within Sama_0740 at 908.237 kb on + strand, within Sama_0740 at 908.237 kb on + strand, within Sama_0740 at 908.237 kb on + strand, within Sama_0740 at 908.237 kb on + strand, within Sama_0740 at 908.238 kb on - strand, within Sama_0740 at 908.238 kb on - strand, within Sama_0740 at 908.238 kb on - strand, within Sama_0740 at 908.238 kb on - strand, within Sama_0740 at 908.268 kb on + strand, within Sama_0740 at 908.268 kb on + strand, within Sama_0740 at 908.268 kb on + strand, within Sama_0740 at 908.269 kb on - strand, within Sama_0740 at 908.269 kb on - strand, within Sama_0740 at 908.269 kb on - strand, within Sama_0740 at 908.269 kb on - strand, within Sama_0740 at 908.269 kb on - strand, within Sama_0740 at 908.270 kb on + strand, within Sama_0740 at 908.270 kb on + strand, within Sama_0740 at 908.270 kb on + strand, within Sama_0740 at 908.270 kb on + strand, within Sama_0740 at 908.270 kb on + strand, within Sama_0740 at 908.270 kb on + strand, within Sama_0740 at 908.270 kb on + strand, within Sama_0740 at 908.271 kb on - strand, within Sama_0740 at 908.271 kb on - strand, within Sama_0740 at 908.271 kb on - strand, within Sama_0740 at 908.271 kb on - strand, within Sama_0740 at 908.271 kb on - strand, within Sama_0740 at 908.271 kb on - strand, within Sama_0740 at 908.271 kb on - strand, within Sama_0740 at 908.271 kb on - strand, within Sama_0740 at 908.271 kb on - strand, within Sama_0740 at 908.271 kb on - strand, within Sama_0740 at 908.271 kb on - strand, within Sama_0740 at 908.271 kb on - strand, within Sama_0740 at 908.271 kb on - strand, within Sama_0740 at 908.277 kb on + strand, within Sama_0740 at 908.278 kb on - strand, within Sama_0740 at 908.297 kb on + strand, within Sama_0740 at 908.297 kb on + strand, within Sama_0740 at 908.297 kb on + strand, within Sama_0740 at 908.298 kb on - strand, within Sama_0740 at 908.298 kb on - strand, within Sama_0740 at 908.298 kb on - strand, within Sama_0740 at 908.298 kb on - strand, within Sama_0740 at 908.306 kb on - strand, within Sama_0740 at 908.323 kb on + strand, within Sama_0740 at 908.324 kb on - strand, within Sama_0740 at 908.324 kb on - strand, within Sama_0740 at 908.355 kb on + strand, within Sama_0740 at 908.355 kb on + strand, within Sama_0740 at 908.355 kb on + strand, within Sama_0740 at 908.356 kb on - strand, within Sama_0740 at 908.356 kb on - strand, within Sama_0740 at 908.399 kb on + strand, within Sama_0740 at 908.399 kb on + strand, within Sama_0740 at 908.399 kb on + strand, within Sama_0740 at 908.399 kb on + strand, within Sama_0740 at 908.400 kb on - strand, within Sama_0740 at 908.400 kb on - strand, within Sama_0740 at 908.401 kb on + strand, within Sama_0740 at 908.401 kb on + strand, within Sama_0740 at 908.401 kb on + strand, within Sama_0740 at 908.401 kb on + strand, within Sama_0740 at 908.401 kb on + strand, within Sama_0740 at 908.474 kb on + strand at 908.474 kb on + strand at 908.474 kb on + strand at 908.474 kb on + strand at 908.474 kb on + strand at 908.475 kb on - strand at 908.475 kb on - strand at 908.475 kb on - strand at 908.478 kb on + strand at 908.478 kb on + strand at 908.478 kb on + strand at 908.478 kb on + strand at 908.478 kb on + strand at 908.478 kb on + strand at 908.478 kb on + strand at 908.479 kb on - strand at 908.479 kb on - strand at 908.479 kb on - strand at 908.479 kb on - strand at 908.479 kb on - strand at 908.479 kb on - strand at 908.479 kb on - strand at 908.548 kb on + strand at 908.548 kb on + strand at 908.548 kb on + strand at 908.548 kb on + strand at 908.549 kb on - strand at 908.566 kb on + strand at 908.567 kb on - strand at 908.616 kb on + strand, within Sama_0741 at 908.650 kb on + strand, within Sama_0741 at 908.650 kb on + strand, within Sama_0741 at 908.650 kb on + strand, within Sama_0741 at 908.651 kb on - strand, within Sama_0741 at 908.670 kb on + strand, within Sama_0741 at 908.671 kb on - strand, within Sama_0741 at 908.691 kb on + strand, within Sama_0741 at 908.730 kb on + strand, within Sama_0741 at 908.730 kb on + strand, within Sama_0741 at 908.731 kb on - strand, within Sama_0741 at 908.731 kb on - strand, within Sama_0741 at 908.815 kb on + strand, within Sama_0741 at 908.815 kb on + strand, within Sama_0741 at 908.816 kb on - strand, within Sama_0741 at 908.838 kb on + strand, within Sama_0741 at 908.839 kb on - strand, within Sama_0741 at 908.839 kb on - strand, within Sama_0741 at 908.839 kb on - strand, within Sama_0741 at 908.839 kb on - strand, within Sama_0741 at 908.839 kb on - strand, within Sama_0741 at 908.966 kb on - strand, within Sama_0741 at 908.982 kb on + strand, within Sama_0741 at 908.982 kb on + strand, within Sama_0741 at 908.983 kb on - strand, within Sama_0741 at 909.032 kb on + strand at 909.037 kb on + strand at 909.037 kb on + strand at 909.037 kb on + strand at 909.037 kb on + strand at 909.037 kb on + strand at 909.038 kb on - strand at 909.038 kb on - strand at 909.081 kb on + strand at 909.081 kb on + strand at 909.081 kb on + strand at 909.082 kb on - strand at 909.082 kb on - strand at 909.120 kb on + strand at 909.121 kb on - strand at 909.121 kb on - strand at 909.121 kb on - strand at 909.127 kb on + strand at 909.128 kb on - strand at 909.128 kb on - strand at 909.142 kb on - strand at 909.142 kb on - strand at 909.204 kb on - strand at 909.204 kb on - strand at 909.239 kb on - strand at 909.254 kb on - strand at 909.254 kb on - strand at 909.288 kb on + strand at 909.288 kb on + strand at 909.289 kb on - strand at 909.289 kb on - strand at 909.289 kb on - strand at 909.309 kb on + strand at 909.310 kb on - strand at 909.310 kb on - strand at 909.310 kb on - strand at 909.373 kb on - strand, within Sama_0742 at 909.384 kb on + strand, within Sama_0742 at 909.385 kb on - strand, within Sama_0742 at 909.385 kb on - strand, within Sama_0742 at 909.385 kb on - strand, within Sama_0742 at 909.385 kb on - strand, within Sama_0742
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 20 mM remove 906,747 + +0.2 906,747 + -0.1 906,747 + +0.0 906,747 + +0.7 906,748 - -0.8 906,748 - -1.6 906,758 + +1.0 906,758 + -0.0 906,758 + +0.6 906,758 + -1.3 906,759 - +0.6 906,934 + Sama_0739 0.21 -0.1 906,935 - Sama_0739 0.21 +0.6 906,996 + Sama_0739 0.28 -0.1 907,020 + Sama_0739 0.31 -1.1 907,020 + Sama_0739 0.31 -0.6 907,041 + Sama_0739 0.33 +0.9 907,116 + Sama_0739 0.42 +0.0 907,116 + Sama_0739 0.42 -1.8 907,126 + Sama_0739 0.43 -0.9 907,126 + Sama_0739 0.43 -0.4 907,126 + Sama_0739 0.43 +0.2 907,127 - Sama_0739 0.43 -1.0 907,127 - Sama_0739 0.43 -1.0 907,164 + Sama_0739 0.47 +0.4 907,164 + Sama_0739 0.47 -0.5 907,164 + Sama_0739 0.47 -0.1 907,164 + Sama_0739 0.47 -0.4 907,165 - Sama_0739 0.48 +0.5 907,165 - Sama_0739 0.48 +0.3 907,236 - Sama_0739 0.56 -0.5 907,236 - Sama_0739 0.56 +0.8 907,276 + Sama_0739 0.60 +0.3 907,277 - Sama_0739 0.60 -0.7 907,289 + Sama_0739 0.62 +0.5 907,289 + Sama_0739 0.62 -0.3 907,289 + Sama_0739 0.62 -0.2 907,289 + Sama_0739 0.62 +0.9 907,290 - Sama_0739 0.62 +0.0 907,290 - Sama_0739 0.62 +0.2 907,290 - Sama_0739 0.62 +1.3 907,366 + Sama_0739 0.71 -0.6 907,367 - Sama_0739 0.71 +0.7 907,367 - Sama_0739 0.71 -0.2 907,379 + Sama_0739 0.72 +0.4 907,379 + Sama_0739 0.72 +0.2 907,380 - Sama_0739 0.72 -0.1 907,485 + Sama_0739 0.84 +0.5 907,518 + Sama_0739 0.88 +0.6 907,540 + -0.9 907,540 + +0.9 907,540 + +1.7 907,541 - -0.1 907,600 + -0.1 907,601 - +0.0 907,601 - -0.5 907,601 - -0.7 907,607 + +0.6 907,608 - +0.3 907,608 - +0.5 907,608 - -0.5 907,608 - +2.4 907,622 - -0.3 907,636 + -1.0 907,649 - -0.1 907,659 + +0.1 907,659 + -0.2 907,659 + +0.0 907,660 - -0.3 907,660 - +2.3 907,737 + -0.5 907,738 - -1.8 907,790 - -1.2 907,790 - +0.6 907,790 - +0.4 907,790 - -1.0 907,790 - +0.9 907,790 - +2.0 907,845 + Sama_0740 0.14 +0.4 907,845 + Sama_0740 0.14 -0.1 907,846 - Sama_0740 0.14 +0.4 907,875 + Sama_0740 0.18 -2.4 907,875 + Sama_0740 0.18 +0.1 907,937 - Sama_0740 0.27 +0.4 907,984 + Sama_0740 0.33 -1.2 907,984 + Sama_0740 0.33 -0.1 907,984 + Sama_0740 0.33 -1.6 907,984 + Sama_0740 0.33 -1.0 907,984 + Sama_0740 0.33 +1.3 907,984 + Sama_0740 0.33 -0.2 907,984 + Sama_0740 0.33 +0.5 907,985 - Sama_0740 0.33 -0.2 907,985 - Sama_0740 0.33 +0.5 907,985 - Sama_0740 0.33 -0.7 907,985 - Sama_0740 0.33 -0.5 907,985 - Sama_0740 0.33 -0.9 907,985 - Sama_0740 0.33 -0.4 908,023 + Sama_0740 0.38 -0.3 908,023 + Sama_0740 0.38 -0.1 908,023 + Sama_0740 0.38 -0.7 908,024 - Sama_0740 0.39 +0.9 908,024 - Sama_0740 0.39 -0.2 908,024 - Sama_0740 0.39 -1.2 908,107 + Sama_0740 0.50 +0.0 908,108 - Sama_0740 0.50 +0.6 908,108 - Sama_0740 0.50 +0.8 908,167 + Sama_0740 0.58 +0.4 908,167 + Sama_0740 0.58 -2.0 908,208 + Sama_0740 0.64 -0.3 908,208 + Sama_0740 0.64 +1.0 908,237 + Sama_0740 0.67 +0.3 908,237 + Sama_0740 0.67 +0.0 908,237 + Sama_0740 0.67 +1.5 908,237 + Sama_0740 0.67 +0.7 908,237 + Sama_0740 0.67 +0.8 908,237 + Sama_0740 0.67 -0.7 908,238 - Sama_0740 0.68 +1.6 908,238 - Sama_0740 0.68 -2.0 908,238 - Sama_0740 0.68 -1.2 908,238 - Sama_0740 0.68 -0.5 908,268 + Sama_0740 0.72 -1.4 908,268 + Sama_0740 0.72 +0.7 908,268 + Sama_0740 0.72 +0.0 908,269 - Sama_0740 0.72 +1.8 908,269 - Sama_0740 0.72 +0.1 908,269 - Sama_0740 0.72 +0.7 908,269 - Sama_0740 0.72 -1.0 908,269 - Sama_0740 0.72 -0.5 908,270 + Sama_0740 0.72 +0.1 908,270 + Sama_0740 0.72 -0.7 908,270 + Sama_0740 0.72 +0.3 908,270 + Sama_0740 0.72 -1.1 908,270 + Sama_0740 0.72 -0.2 908,270 + Sama_0740 0.72 -0.6 908,270 + Sama_0740 0.72 -2.4 908,271 - Sama_0740 0.72 -0.2 908,271 - Sama_0740 0.72 +0.3 908,271 - Sama_0740 0.72 -0.9 908,271 - Sama_0740 0.72 -0.9 908,271 - Sama_0740 0.72 -1.0 908,271 - Sama_0740 0.72 +0.4 908,271 - Sama_0740 0.72 +0.5 908,271 - Sama_0740 0.72 +0.4 908,271 - Sama_0740 0.72 +0.0 908,271 - Sama_0740 0.72 -0.6 908,271 - Sama_0740 0.72 +0.4 908,271 - Sama_0740 0.72 +0.5 908,271 - Sama_0740 0.72 -0.3 908,277 + Sama_0740 0.73 -0.2 908,278 - Sama_0740 0.73 -1.2 908,297 + Sama_0740 0.76 -0.8 908,297 + Sama_0740 0.76 +0.2 908,297 + Sama_0740 0.76 +0.6 908,298 - Sama_0740 0.76 +0.9 908,298 - Sama_0740 0.76 +1.4 908,298 - Sama_0740 0.76 -1.3 908,298 - Sama_0740 0.76 -2.4 908,306 - Sama_0740 0.77 +0.0 908,323 + Sama_0740 0.79 +0.7 908,324 - Sama_0740 0.79 +0.6 908,324 - Sama_0740 0.79 -0.4 908,355 + Sama_0740 0.83 +0.7 908,355 + Sama_0740 0.83 +0.8 908,355 + Sama_0740 0.83 +0.4 908,356 - Sama_0740 0.84 -0.4 908,356 - Sama_0740 0.84 -0.6 908,399 + Sama_0740 0.89 +0.2 908,399 + Sama_0740 0.89 -0.9 908,399 + Sama_0740 0.89 +0.8 908,399 + Sama_0740 0.89 -1.0 908,400 - Sama_0740 0.90 +0.6 908,400 - Sama_0740 0.90 -0.3 908,401 + Sama_0740 0.90 -1.0 908,401 + Sama_0740 0.90 -1.1 908,401 + Sama_0740 0.90 +0.7 908,401 + Sama_0740 0.90 +0.5 908,401 + Sama_0740 0.90 -0.4 908,474 + -0.4 908,474 + +0.1 908,474 + -0.3 908,474 + -0.1 908,474 + -0.4 908,475 - +0.4 908,475 - +0.2 908,475 - +0.3 908,478 + +1.0 908,478 + -0.5 908,478 + -0.3 908,478 + +0.9 908,478 + -0.9 908,478 + -0.1 908,478 + +0.0 908,479 - +0.5 908,479 - -0.2 908,479 - +0.3 908,479 - -0.1 908,479 - +0.2 908,479 - +0.0 908,479 - -0.2 908,548 + +0.6 908,548 + -0.0 908,548 + +2.0 908,548 + +0.0 908,549 - -0.8 908,566 + -0.1 908,567 - -1.2 908,616 + Sama_0741 0.15 -0.2 908,650 + Sama_0741 0.21 +1.0 908,650 + Sama_0741 0.21 +0.3 908,650 + Sama_0741 0.21 +0.9 908,651 - Sama_0741 0.21 +0.2 908,670 + Sama_0741 0.25 +0.6 908,671 - Sama_0741 0.25 -0.6 908,691 + Sama_0741 0.29 -0.4 908,730 + Sama_0741 0.36 +0.3 908,730 + Sama_0741 0.36 +0.3 908,731 - Sama_0741 0.37 -0.4 908,731 - Sama_0741 0.37 -0.1 908,815 + Sama_0741 0.52 -1.0 908,815 + Sama_0741 0.52 +0.2 908,816 - Sama_0741 0.53 -0.4 908,838 + Sama_0741 0.57 +0.2 908,839 - Sama_0741 0.57 -0.3 908,839 - Sama_0741 0.57 +0.4 908,839 - Sama_0741 0.57 +1.3 908,839 - Sama_0741 0.57 -0.4 908,839 - Sama_0741 0.57 -0.1 908,966 - Sama_0741 0.81 +0.7 908,982 + Sama_0741 0.84 +0.6 908,982 + Sama_0741 0.84 -0.4 908,983 - Sama_0741 0.84 -0.1 909,032 + +1.7 909,037 + -1.0 909,037 + -2.2 909,037 + +0.8 909,037 + +0.6 909,037 + +0.1 909,038 - +0.0 909,038 - +1.3 909,081 + -0.3 909,081 + +0.3 909,081 + -0.4 909,082 - -0.4 909,082 - -0.4 909,120 + -0.5 909,121 - -1.0 909,121 - +0.2 909,121 - -0.6 909,127 + +0.4 909,128 - -1.0 909,128 - -0.3 909,142 - -0.8 909,142 - -1.0 909,204 - +1.8 909,204 - -1.8 909,239 - +0.6 909,254 - +0.4 909,254 - -0.0 909,288 + +0.8 909,288 + -2.0 909,289 - -0.4 909,289 - +0.4 909,289 - -0.3 909,309 + +0.7 909,310 - +0.2 909,310 - +0.3 909,310 - -1.6 909,373 - Sama_0742 0.23 -0.4 909,384 + Sama_0742 0.27 -0.2 909,385 - Sama_0742 0.27 -0.6 909,385 - Sama_0742 0.27 +0.8 909,385 - Sama_0742 0.27 +1.2 909,385 - Sama_0742 0.27 +0.6
Or see this region's nucleotide sequence