Experiment: 5-Hydroxymethylfurfural 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0467 and Sama_0468 are separated by 45 nucleotides Sama_0468 and Sama_0469 overlap by 4 nucleotides Sama_0469 and Sama_0470 are separated by 5 nucleotides Sama_0470 and Sama_0471 are separated by 47 nucleotides
Sama_0467: Sama_0467 - rod shape-determining protein MreB (RefSeq), at 573,182 to 574,231
_0467
Sama_0468: Sama_0468 - rod shape-determining protein MreC (RefSeq), at 574,277 to 575,206
_0468
Sama_0469: Sama_0469 - rod shape-determining protein MreD (RefSeq), at 575,203 to 575,691
_0469
Sama_0470: Sama_0470 - maf protein (RefSeq), at 575,697 to 576,281
_0470
Sama_0471: Sama_0471 - ribonuclease G (RefSeq), at 576,329 to 577,837
_0471
Position (kb) 575
576 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 574.276 kb on + strand at 574.276 kb on + strand at 574.276 kb on + strand at 575.679 kb on + strand at 575.679 kb on + strand at 575.689 kb on + strand at 575.838 kb on + strand, within Sama_0470 at 575.838 kb on + strand, within Sama_0470 at 575.838 kb on + strand, within Sama_0470 at 575.838 kb on + strand, within Sama_0470 at 575.838 kb on + strand, within Sama_0470 at 575.838 kb on + strand, within Sama_0470 at 575.838 kb on + strand, within Sama_0470 at 575.838 kb on + strand, within Sama_0470 at 575.839 kb on - strand, within Sama_0470 at 575.839 kb on - strand, within Sama_0470 at 575.839 kb on - strand, within Sama_0470 at 575.839 kb on - strand, within Sama_0470 at 575.839 kb on - strand, within Sama_0470 at 575.839 kb on - strand, within Sama_0470 at 575.839 kb on - strand, within Sama_0470 at 575.894 kb on + strand, within Sama_0470 at 575.894 kb on + strand, within Sama_0470 at 575.894 kb on + strand, within Sama_0470 at 575.894 kb on + strand, within Sama_0470 at 575.894 kb on + strand, within Sama_0470 at 575.894 kb on + strand, within Sama_0470 at 575.894 kb on + strand, within Sama_0470 at 575.895 kb on - strand, within Sama_0470 at 575.895 kb on - strand, within Sama_0470 at 575.895 kb on - strand, within Sama_0470 at 575.895 kb on - strand, within Sama_0470 at 575.895 kb on - strand, within Sama_0470 at 575.895 kb on - strand, within Sama_0470 at 575.929 kb on + strand, within Sama_0470 at 575.929 kb on + strand, within Sama_0470 at 575.929 kb on + strand, within Sama_0470 at 575.929 kb on + strand, within Sama_0470 at 575.929 kb on + strand, within Sama_0470 at 575.929 kb on + strand, within Sama_0470 at 575.929 kb on + strand, within Sama_0470 at 575.930 kb on - strand, within Sama_0470 at 575.930 kb on - strand, within Sama_0470 at 575.930 kb on - strand, within Sama_0470 at 575.930 kb on - strand, within Sama_0470 at 575.957 kb on + strand, within Sama_0470 at 575.958 kb on - strand, within Sama_0470 at 576.056 kb on + strand, within Sama_0470 at 576.057 kb on - strand, within Sama_0470 at 576.057 kb on - strand, within Sama_0470 at 576.113 kb on + strand, within Sama_0470 at 576.123 kb on + strand, within Sama_0470 at 576.123 kb on + strand, within Sama_0470 at 576.124 kb on - strand, within Sama_0470 at 576.124 kb on - strand, within Sama_0470 at 576.149 kb on + strand, within Sama_0470 at 576.149 kb on + strand, within Sama_0470 at 576.150 kb on - strand, within Sama_0470 at 576.162 kb on + strand, within Sama_0470 at 576.162 kb on + strand, within Sama_0470 at 576.163 kb on - strand, within Sama_0470 at 576.167 kb on + strand, within Sama_0470 at 576.167 kb on + strand, within Sama_0470 at 576.168 kb on - strand, within Sama_0470 at 576.213 kb on + strand, within Sama_0470 at 576.213 kb on + strand, within Sama_0470 at 576.233 kb on - strand at 576.256 kb on + strand at 576.256 kb on + strand at 576.279 kb on + strand at 576.279 kb on + strand at 576.303 kb on + strand at 576.303 kb on + strand at 576.344 kb on - strand at 576.392 kb on - strand at 576.491 kb on - strand, within Sama_0471 at 576.494 kb on + strand, within Sama_0471 at 576.494 kb on + strand, within Sama_0471 at 576.494 kb on + strand, within Sama_0471 at 576.494 kb on + strand, within Sama_0471 at 576.494 kb on + strand, within Sama_0471 at 576.494 kb on + strand, within Sama_0471 at 576.494 kb on + strand, within Sama_0471 at 576.495 kb on - strand, within Sama_0471 at 576.495 kb on - strand, within Sama_0471 at 576.495 kb on - strand, within Sama_0471 at 576.559 kb on + strand, within Sama_0471 at 576.560 kb on - strand, within Sama_0471 at 576.573 kb on + strand, within Sama_0471
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 20 mM remove 574,276 + -0.7 574,276 + -1.0 574,276 + -0.4 575,679 + -2.6 575,679 + -0.9 575,689 + +0.1 575,838 + Sama_0470 0.24 -0.2 575,838 + Sama_0470 0.24 -0.9 575,838 + Sama_0470 0.24 -0.8 575,838 + Sama_0470 0.24 -0.9 575,838 + Sama_0470 0.24 -0.3 575,838 + Sama_0470 0.24 -0.4 575,838 + Sama_0470 0.24 -0.5 575,838 + Sama_0470 0.24 +1.1 575,839 - Sama_0470 0.24 -0.9 575,839 - Sama_0470 0.24 -0.8 575,839 - Sama_0470 0.24 -0.1 575,839 - Sama_0470 0.24 +1.1 575,839 - Sama_0470 0.24 -1.7 575,839 - Sama_0470 0.24 +0.8 575,839 - Sama_0470 0.24 -1.3 575,894 + Sama_0470 0.34 -0.1 575,894 + Sama_0470 0.34 +0.1 575,894 + Sama_0470 0.34 -0.3 575,894 + Sama_0470 0.34 +0.6 575,894 + Sama_0470 0.34 +1.5 575,894 + Sama_0470 0.34 +0.5 575,894 + Sama_0470 0.34 +0.1 575,895 - Sama_0470 0.34 +0.4 575,895 - Sama_0470 0.34 +1.1 575,895 - Sama_0470 0.34 +0.7 575,895 - Sama_0470 0.34 -0.9 575,895 - Sama_0470 0.34 -2.4 575,895 - Sama_0470 0.34 +1.1 575,929 + Sama_0470 0.40 +0.6 575,929 + Sama_0470 0.40 -0.0 575,929 + Sama_0470 0.40 +0.2 575,929 + Sama_0470 0.40 -0.6 575,929 + Sama_0470 0.40 +0.9 575,929 + Sama_0470 0.40 +0.6 575,929 + Sama_0470 0.40 -0.5 575,930 - Sama_0470 0.40 +0.9 575,930 - Sama_0470 0.40 -0.3 575,930 - Sama_0470 0.40 +0.1 575,930 - Sama_0470 0.40 -0.6 575,957 + Sama_0470 0.44 +1.4 575,958 - Sama_0470 0.45 +0.4 576,056 + Sama_0470 0.61 +0.1 576,057 - Sama_0470 0.62 -1.4 576,057 - Sama_0470 0.62 -0.1 576,113 + Sama_0470 0.71 -0.4 576,123 + Sama_0470 0.73 -1.7 576,123 + Sama_0470 0.73 -1.4 576,124 - Sama_0470 0.73 -0.9 576,124 - Sama_0470 0.73 -3.2 576,149 + Sama_0470 0.77 -0.4 576,149 + Sama_0470 0.77 +1.1 576,150 - Sama_0470 0.77 +0.1 576,162 + Sama_0470 0.79 -0.4 576,162 + Sama_0470 0.79 -1.2 576,163 - Sama_0470 0.80 -2.2 576,167 + Sama_0470 0.80 +0.3 576,167 + Sama_0470 0.80 +0.3 576,168 - Sama_0470 0.81 -0.6 576,213 + Sama_0470 0.88 +0.6 576,213 + Sama_0470 0.88 -0.0 576,233 - -0.4 576,256 + +0.0 576,256 + -1.3 576,279 + +0.4 576,279 + -0.2 576,303 + -1.2 576,303 + +3.5 576,344 - -0.9 576,392 - -1.4 576,491 - Sama_0471 0.11 -0.4 576,494 + Sama_0471 0.11 -1.5 576,494 + Sama_0471 0.11 -0.4 576,494 + Sama_0471 0.11 -1.4 576,494 + Sama_0471 0.11 -2.2 576,494 + Sama_0471 0.11 -2.9 576,494 + Sama_0471 0.11 -1.7 576,494 + Sama_0471 0.11 -0.9 576,495 - Sama_0471 0.11 -0.9 576,495 - Sama_0471 0.11 -3.2 576,495 - Sama_0471 0.11 -0.4 576,559 + Sama_0471 0.15 -1.4 576,560 - Sama_0471 0.15 -0.9 576,573 + Sama_0471 0.16 -2.4
Or see this region's nucleotide sequence