Strain Fitness in Shewanella amazonensis SB2B around Sama_0355

Experiment: 5-Hydroxymethylfurfural 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmurG and murC are separated by 9 nucleotidesmurC and Sama_0356 are separated by 112 nucleotidesSama_0356 and Sama_0357 are separated by 3 nucleotides Sama_0354: murG - undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase (RefSeq), at 424,372 to 425,454 murG Sama_0355: murC - UDP-N-acetylmuramate--L-alanine ligase (RefSeq), at 425,464 to 426,918 murC Sama_0356: Sama_0356 - cell division protein FtsQ (RefSeq), at 427,031 to 427,855 _0356 Sama_0357: Sama_0357 - cell division protein FtsA (RefSeq), at 427,859 to 429,094 _0357 Position (kb) 425 426 427Strain fitness (log2 ratio) -2 -1 0 1at 425.452 kb on + strandat 426.854 kb on + strandat 426.854 kb on + strandat 426.854 kb on + strandat 426.854 kb on + strandat 426.854 kb on + strandat 426.854 kb on + strandat 426.854 kb on + strandat 426.854 kb on + strandat 426.854 kb on + strandat 426.985 kb on + strandat 426.985 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 20 mM
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425,452 + -0.5
426,854 + -2.4
426,854 + -0.5
426,854 + -0.0
426,854 + -1.1
426,854 + +0.3
426,854 + -0.7
426,854 + +0.5
426,854 + -0.5
426,854 + -0.0
426,985 + -0.4
426,985 + -0.8

Or see this region's nucleotide sequence