Strain Fitness in Shewanella amazonensis SB2B around Sama_0350

Experiment: 5-Hydroxymethylfurfural 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmurE and Sama_0350 overlap by 4 nucleotidesSama_0350 and mraY are separated by 0 nucleotides Sama_0349: murE - UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase (RefSeq), at 417,929 to 419,392 murE Sama_0350: Sama_0350 - UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase (RefSeq), at 419,389 to 420,756 _0350 Sama_0351: mraY - phospho-N-acetylmuramoyl-pentapeptide- transferase (RefSeq), at 420,757 to 421,839 mraY Position (kb) 419 420 421Strain fitness (log2 ratio) -1 0 1at 419.373 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 20 mM
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419,373 + -1.0

Or see this region's nucleotide sequence