Strain Fitness in Shewanella amazonensis SB2B around Sama_0091

Experiment: 5-Hydroxymethylfurfural 20 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 20 mM
101,346	-		Sama_0090	0.72	-0.3
101,346	-		Sama_0090	0.72	+0.2
101,371	+		Sama_0090	0.75	-0.0
101,498	+				+0.8
101,498	+				+0.7
101,498	+				-1.2
101,499	-				+2.3
101,499	-				+0.7
101,499	-				+0.2
101,499	-				+0.4
101,499	-				-0.9
101,499	-				+0.3
101,499	-				-1.3
101,561	+				+0.2
101,561	+				-0.3
101,561	+				-1.0
101,562	-				+0.1
101,578	+				-0.7
101,578	+				+1.3
101,578	+				+0.5
101,578	+				+0.7
101,579	-				+0.1
101,579	-				+0.7
101,579	-				-0.4
101,579	-				-2.2
101,579	-				-1.4
101,579	-				-0.1
101,580	+				+0.7
101,580	+				+0.4
101,580	+				-1.0
101,580	+				+1.7
101,580	+				+0.4
101,580	+				+0.7
101,580	+				-0.2
101,581	-				+1.1
101,581	-				-0.0
101,581	-				-0.0
101,581	-				+0.3
101,581	-				-1.4
101,581	-				+0.5
101,581	-				-0.2
101,581	-				+0.9
101,581	-				-0.6
101,610	+				-0.3
101,644	+				-0.7
101,645	-				-0.2
101,645	-				-0.4
101,645	-				+0.2
101,660	-				-0.7
101,660	-				+0.0
101,660	-				+0.2
101,660	-				-0.6
101,660	-				-0.8
101,660	-				-1.7
101,660	-				-0.1
101,660	-				-0.6
101,665	+				-0.0
101,665	+				-0.3
101,666	-				+0.2
101,666	-				-0.2
101,666	-				-0.1
101,666	-				-0.9
101,666	-				+0.5
101,666	-				-1.1
101,666	-				-0.8
101,666	-				+0.9
101,666	-				-1.5
101,666	-				-1.3
101,666	-				-0.4
101,672	+				+1.3
101,672	+				-0.6
101,672	+				-0.1
101,672	+				+0.8
101,672	+				-1.2
101,673	-				-0.9
101,673	-				+0.2
101,673	-				+0.0
101,673	-				-1.9
101,673	-				-0.5
101,673	-				-0.4
101,673	-				-0.9
101,673	-				+0.1
101,673	-				+0.4
101,673	-				-0.4
101,673	-				+0.4
101,673	-				+2.3
101,673	-				-0.8
101,673	-				-0.8
101,757	-				-1.3
101,788	+				-1.5
101,789	-				-0.3
101,789	-				-1.9
101,789	-				+1.1
101,789	-				-0.7
101,789	-				+0.1
101,789	-				-1.3
101,789	-				+1.3
101,813	+				-0.7
101,838	-				-1.4
101,838	-				+0.7
101,838	-				-0.5
101,841	+				-0.3
101,842	-				-0.9
101,861	+				-0.4
101,861	+				+0.1
101,862	-				-1.2
101,862	-				-0.6
101,862	-				-1.5
101,862	-				+0.5
101,862	-				+0.5
101,875	+				+0.2
101,875	+				-0.8
101,875	+				+0.5
101,876	-				+0.4
101,876	-				-0.7
101,876	-				+0.8
101,876	-				-2.3
101,876	-				-0.7
101,924	+				-0.0
101,925	-				-0.0
101,925	-				+0.6
101,925	-				+0.4
101,955	+				+0.6
101,982	-				+0.3
102,014	-				-0.7
102,020	+				+0.5
102,049	-				-0.8
102,056	-				+0.5
102,056	-				-1.7
102,056	-				-1.9
102,056	-				-0.6
102,058	+				-0.9
102,061	+				+0.5
102,062	-				+0.8
102,062	-				-0.2
102,081	-				-1.2
102,084	-				-0.4
102,084	-				+0.3
102,087	-				-0.7
102,087	-				+1.5
102,105	+				-0.8
102,105	+				+0.3
102,106	-				-0.3
102,113	+				-0.3
102,113	+				-0.9
102,125	-				-0.6
102,131	+				-0.1
102,143	+				-0.6
102,151	+				-0.7
102,151	+				-0.5
102,151	+				-1.2
102,152	-				-2.5
102,170	-				+0.1
102,170	-				-0.2
102,202	-				-0.0
102,315	-				+0.0
102,315	-				-1.0
102,315	-				+0.3
102,315	-				+0.3
102,315	-				+0.4
102,315	-				-0.0
102,324	+				+1.3
102,332	+				-1.9
102,332	+				-1.0
102,333	-				-0.1
102,333	-				-1.5
102,333	-				-2.8
102,333	-				-2.8
102,408	+		Sama_0091	0.15	-2.5
102,409	-		Sama_0091	0.15	-2.4
102,449	+		Sama_0091	0.22	-0.7
102,449	+		Sama_0091	0.22	-1.9
102,449	+		Sama_0091	0.22	-0.7
102,449	+		Sama_0091	0.22	-2.6
102,450	-		Sama_0091	0.22	-1.3
102,450	-		Sama_0091	0.22	-1.7
102,450	-		Sama_0091	0.22	-1.0
102,450	-		Sama_0091	0.22	-4.0
102,450	-		Sama_0091	0.22	-1.9
102,501	+		Sama_0091	0.30	-3.0
102,526	-		Sama_0091	0.34	-0.7
102,563	+		Sama_0091	0.40	-2.2
102,563	+		Sama_0091	0.40	-1.9
102,564	-		Sama_0091	0.40	+0.1
102,564	-		Sama_0091	0.40	-3.2
102,586	+		Sama_0091	0.44	-1.9
102,586	+		Sama_0091	0.44	+0.3
102,648	+		Sama_0091	0.54	-1.3
102,648	+		Sama_0091	0.54	-2.3
102,670	+		Sama_0091	0.57	-1.3
102,687	+		Sama_0091	0.60	-1.3
102,687	+		Sama_0091	0.60	-1.7
102,688	-		Sama_0091	0.60	+0.3
102,688	-		Sama_0091	0.60	-0.9
102,688	-		Sama_0091	0.60	-2.8
102,758	+		Sama_0091	0.72	-0.5
102,759	-		Sama_0091	0.72	-1.5
102,759	-		Sama_0091	0.72	-0.3
102,759	-		Sama_0091	0.72	+0.9
102,762	+		Sama_0091	0.72	-0.3
102,762	+		Sama_0091	0.72	+0.3
102,762	+		Sama_0091	0.72	-0.7
102,763	-		Sama_0091	0.72	-2.2
102,763	-		Sama_0091	0.72	-0.7
102,763	-		Sama_0091	0.72	-2.3
102,763	-		Sama_0091	0.72	-1.8
102,763	-		Sama_0091	0.72	-0.7
102,763	-		Sama_0091	0.72	-1.9
102,763	-		Sama_0091	0.72	-0.3
102,763	-		Sama_0091	0.72	-1.4
102,788	+		Sama_0091	0.76	-1.7
102,788	+		Sama_0091	0.76	+0.3
102,789	-		Sama_0091	0.77	-3.0
102,792	+		Sama_0091	0.77	-1.0
102,792	+		Sama_0091	0.77	-2.5
102,792	+		Sama_0091	0.77	+0.5
102,792	+		Sama_0091	0.77	+1.3
102,793	-		Sama_0091	0.77	-2.2
102,793	-		Sama_0091	0.77	-0.7
102,793	-		Sama_0091	0.77	-1.4
102,793	-		Sama_0091	0.77	-3.0
102,793	-		Sama_0091	0.77	-3.2
102,879	+				-0.0
102,880	+				-4.2
102,880	-				-2.0
102,880	-				-0.3
102,888	+				-3.0
102,889	-				-0.9
102,889	-				-1.7
102,894	+				-3.0
102,894	+				-0.7
102,894	+				-0.7
102,894	+				+1.3
102,894	+				-2.5
102,894	+				-1.5
102,894	+				+0.9
102,894	+				-2.5
102,894	+				-1.7
102,894	+				-1.7
102,894	+				-1.9
102,895	-				-3.2
102,895	-				-1.5
102,895	-				-1.9
102,895	-				-0.0
102,895	-				-3.6
102,895	-				-1.3
102,895	-				-1.5
102,895	-				-0.7
102,895	-				-1.3
102,895	-				-2.9
102,895	-				-2.0
102,895	-				-0.5
102,895	-				+2.6
102,895	-				-1.2
102,895	-				-2.4
102,895	-				-0.7
102,895	-				-2.3
102,922	+				-1.0
102,933	+				-1.5
102,933	+				-3.0
102,933	+				-3.3
102,958	+				-2.0
102,958	+				-1.9
102,959	-				-1.3
102,959	-				+0.3
102,996	+				-1.5
102,996	+				-3.2
102,999	+				-1.5
103,001	+				-1.9
103,001	+				-2.5
103,001	+				-2.5
103,001	+				-0.1
103,001	+				-2.8
103,001	+				-2.6
103,001	+				-0.3
103,006	+				-2.0
103,006	+				-1.0
103,006	+				-2.4
103,006	+				+1.3
103,006	+				-0.8
103,008	+				-1.5
103,008	+				-1.2
103,008	+				-1.0
103,024	+				-0.3
103,049	+				+1.1
103,088	+				-0.0
103,088	+				-0.4
103,812	+				-0.3
103,812	+				+1.1
103,813	-				+0.8
103,876	+				+1.6
103,876	+				+0.2
103,876	-				+0.1
103,876	+				-0.1
103,876	+				+0.2
103,876	+				-0.0
103,876	+				+0.3
103,877	-				+0.1
103,877	-				+0.6
103,877	-				+0.5
103,877	-				+0.5
103,919	+				-0.3
103,920	-				+0.2
103,920	-				-1.3