Experiment: Vanillin 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO1278 and SO1279 are separated by 64 nucleotides SO1279 and SO_1280 are separated by 571 nucleotides
SO1278: SO1278 - methyl-accepting chemotaxis protein (NCBI ptt file), at 1,328,993 to 1,331,113
SO1278
SO1279: SO1279 - hypothetical protein (NCBI ptt file), at 1,331,178 to 1,331,354
SO1279
SO_1280: SO_1280 - no description, at 1,331,926 to 1,332,642
_1280
Position (kb)
1331
1332 Strain fitness (log2 ratio)
-1
0
1 at 1330.189 kb on - strand, within SO1278 at 1330.213 kb on + strand, within SO1278 at 1330.231 kb on + strand, within SO1278 at 1330.545 kb on + strand, within SO1278 at 1330.716 kb on + strand, within SO1278 at 1330.723 kb on + strand, within SO1278 at 1330.726 kb on - strand, within SO1278 at 1330.730 kb on + strand, within SO1278 at 1330.785 kb on - strand, within SO1278 at 1330.807 kb on - strand, within SO1278 at 1330.879 kb on - strand, within SO1278 at 1330.905 kb on - strand at 1330.974 kb on + strand at 1331.023 kb on - strand at 1331.042 kb on + strand at 1331.050 kb on - strand at 1331.065 kb on - strand at 1331.101 kb on + strand at 1331.109 kb on - strand at 1331.109 kb on - strand at 1331.145 kb on - strand at 1331.174 kb on + strand at 1331.203 kb on + strand, within SO1279 at 1331.210 kb on + strand, within SO1279 at 1331.210 kb on + strand, within SO1279 at 1331.210 kb on + strand, within SO1279 at 1331.210 kb on + strand, within SO1279 at 1331.210 kb on + strand, within SO1279 at 1331.210 kb on + strand, within SO1279 at 1331.281 kb on - strand, within SO1279 at 1331.306 kb on + strand, within SO1279 at 1331.314 kb on - strand, within SO1279 at 1331.320 kb on + strand, within SO1279 at 1331.321 kb on - strand, within SO1279 at 1331.353 kb on + strand at 1331.359 kb on + strand at 1331.361 kb on - strand at 1331.376 kb on + strand at 1331.376 kb on + strand at 1331.384 kb on - strand at 1331.384 kb on - strand at 1331.433 kb on + strand at 1331.434 kb on + strand at 1331.441 kb on - strand at 1331.444 kb on - strand at 1331.656 kb on - strand at 1331.666 kb on - strand at 1331.747 kb on + strand at 1331.747 kb on + strand at 1331.791 kb on + strand at 1331.807 kb on + strand at 1331.807 kb on + strand at 1331.807 kb on + strand at 1331.807 kb on + strand at 1331.807 kb on + strand at 1331.815 kb on - strand at 1331.815 kb on - strand at 1331.815 kb on - strand at 1331.815 kb on - strand at 1331.815 kb on - strand at 1331.815 kb on - strand at 1331.815 kb on - strand at 1331.815 kb on - strand at 1331.838 kb on + strand at 1331.869 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 2.5 mM remove 1,330,189 - SO1278 0.56 +0.6 1,330,213 + SO1278 0.58 +0.9 1,330,231 + SO1278 0.58 -1.0 1,330,545 + SO1278 0.73 +0.7 1,330,716 + SO1278 0.81 +0.4 1,330,723 + SO1278 0.82 -0.1 1,330,726 - SO1278 0.82 -1.3 1,330,730 + SO1278 0.82 +0.3 1,330,785 - SO1278 0.84 -0.6 1,330,807 - SO1278 0.86 +0.8 1,330,879 - SO1278 0.89 -0.1 1,330,905 - +0.3 1,330,974 + +1.3 1,331,023 - +0.0 1,331,042 + -1.3 1,331,050 - +0.4 1,331,065 - -0.2 1,331,101 + -0.3 1,331,109 - +0.4 1,331,109 - -0.3 1,331,145 - +0.5 1,331,174 + -0.1 1,331,203 + SO1279 0.14 +0.7 1,331,210 + SO1279 0.18 +0.6 1,331,210 + SO1279 0.18 -0.1 1,331,210 + SO1279 0.18 +0.5 1,331,210 + SO1279 0.18 +0.4 1,331,210 + SO1279 0.18 +0.2 1,331,210 + SO1279 0.18 +0.9 1,331,281 - SO1279 0.58 +0.9 1,331,306 + SO1279 0.72 -0.1 1,331,314 - SO1279 0.77 +0.5 1,331,320 + SO1279 0.80 +1.4 1,331,321 - SO1279 0.81 +0.3 1,331,353 + -0.7 1,331,359 + -0.6 1,331,361 - +0.3 1,331,376 + -0.0 1,331,376 + +0.1 1,331,384 - -0.3 1,331,384 - +0.2 1,331,433 + +0.8 1,331,434 + +0.1 1,331,441 - +0.4 1,331,444 - -0.7 1,331,656 - -0.4 1,331,666 - +0.8 1,331,747 + -1.1 1,331,747 + -0.4 1,331,791 + -0.9 1,331,807 + +0.1 1,331,807 + +0.2 1,331,807 + +0.7 1,331,807 + -0.8 1,331,807 + -0.2 1,331,815 - +0.6 1,331,815 - +0.1 1,331,815 - -0.5 1,331,815 - -1.4 1,331,815 - -0.3 1,331,815 - +0.5 1,331,815 - +0.6 1,331,815 - -0.6 1,331,838 + +0.5 1,331,869 - -1.0
Or see this region's nucleotide sequence