Strain Fitness in Shewanella oneidensis MR-1 around SO0743

Experiment: Vanillin 2.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSO0742 and SO0743 overlap by 4 nucleotidesSO0743 and SO0744 are separated by 133 nucleotides SO0742: SO0742 - iron(III) ABC transporter, ATP-binding protein (NCBI ptt file), at 759,472 to 760,521 SO0742 SO0743: SO0743 - iron(III) ABC transporter, permease protein (NCBI ptt file), at 760,518 to 762,152 SO0743 SO0744: SO0744 - iron(III) ABC transporter, periplasmic iron(III)-binding protein (NCBI ptt file), at 762,286 to 763,293 SO0744 Position (kb) 760 761 762 763Strain fitness (log2 ratio) -2 -1 0 1at 759.530 kb on + strandat 759.538 kb on - strandat 759.538 kb on - strandat 759.538 kb on - strandat 759.538 kb on - strandat 759.538 kb on - strandat 759.538 kb on - strandat 759.566 kb on - strandat 759.843 kb on - strand, within SO0742at 759.845 kb on + strand, within SO0742at 759.853 kb on - strand, within SO0742at 759.877 kb on + strand, within SO0742at 759.886 kb on - strand, within SO0742at 759.923 kb on + strand, within SO0742at 759.930 kb on - strand, within SO0742at 759.959 kb on + strand, within SO0742at 759.969 kb on + strand, within SO0742at 759.969 kb on + strand, within SO0742at 759.969 kb on + strand, within SO0742at 759.969 kb on + strand, within SO0742at 759.969 kb on + strand, within SO0742at 759.969 kb on + strand, within SO0742at 759.969 kb on + strand, within SO0742at 759.977 kb on - strand, within SO0742at 759.977 kb on - strand, within SO0742at 759.977 kb on - strand, within SO0742at 759.977 kb on - strand, within SO0742at 760.114 kb on - strand, within SO0742at 760.114 kb on - strand, within SO0742at 760.114 kb on - strand, within SO0742at 760.127 kb on + strand, within SO0742at 760.129 kb on - strand, within SO0742at 760.132 kb on + strand, within SO0742at 760.177 kb on + strand, within SO0742at 760.178 kb on + strand, within SO0742at 760.178 kb on + strand, within SO0742at 760.186 kb on - strand, within SO0742at 760.201 kb on - strand, within SO0742at 760.208 kb on + strand, within SO0742at 760.259 kb on - strand, within SO0742at 760.259 kb on - strand, within SO0742at 760.259 kb on - strand, within SO0742at 760.285 kb on - strand, within SO0742at 760.295 kb on - strand, within SO0742at 760.376 kb on + strand, within SO0742at 760.404 kb on + strand, within SO0742at 760.412 kb on - strand, within SO0742at 760.663 kb on + strandat 760.671 kb on - strandat 760.776 kb on - strand, within SO0743at 760.776 kb on - strand, within SO0743at 760.796 kb on - strand, within SO0743at 760.799 kb on + strand, within SO0743at 760.799 kb on + strand, within SO0743at 760.799 kb on + strand, within SO0743at 760.807 kb on - strand, within SO0743at 760.807 kb on - strand, within SO0743at 760.814 kb on + strand, within SO0743at 760.822 kb on - strand, within SO0743at 760.822 kb on - strand, within SO0743at 760.853 kb on - strand, within SO0743at 760.853 kb on - strand, within SO0743at 760.928 kb on + strand, within SO0743at 760.928 kb on + strand, within SO0743at 760.928 kb on + strand, within SO0743at 760.936 kb on - strand, within SO0743at 760.937 kb on - strand, within SO0743at 760.985 kb on + strand, within SO0743at 760.985 kb on + strand, within SO0743at 760.993 kb on - strand, within SO0743at 760.993 kb on - strand, within SO0743at 760.993 kb on - strand, within SO0743at 760.993 kb on - strand, within SO0743at 760.998 kb on + strand, within SO0743at 761.006 kb on - strand, within SO0743at 761.015 kb on + strandat 761.023 kb on - strandat 761.075 kb on + strand, within SO0743at 761.083 kb on - strand, within SO0743at 761.108 kb on - strand, within SO0743at 761.152 kb on - strand, within SO0743at 761.186 kb on + strand, within SO0743at 761.194 kb on - strand, within SO0743at 761.198 kb on + strand, within SO0743at 761.291 kb on + strand, within SO0743at 761.291 kb on + strand, within SO0743at 761.310 kb on - strand, within SO0743at 761.383 kb on + strand, within SO0743at 761.419 kb on + strand, within SO0743at 761.419 kb on + strand, within SO0743at 761.419 kb on + strand, within SO0743at 761.427 kb on - strand, within SO0743at 761.472 kb on - strand, within SO0743at 761.481 kb on + strand, within SO0743at 761.559 kb on + strand, within SO0743at 761.645 kb on + strand, within SO0743at 761.729 kb on + strand, within SO0743at 761.737 kb on - strand, within SO0743at 761.739 kb on - strand, within SO0743at 761.772 kb on + strand, within SO0743at 761.778 kb on + strand, within SO0743at 761.799 kb on + strand, within SO0743at 761.799 kb on + strand, within SO0743at 761.799 kb on + strand, within SO0743at 761.807 kb on - strand, within SO0743at 761.807 kb on - strand, within SO0743at 761.807 kb on - strand, within SO0743at 761.807 kb on - strand, within SO0743at 761.828 kb on + strand, within SO0743at 761.874 kb on - strand, within SO0743at 761.943 kb on - strand, within SO0743at 761.984 kb on + strand, within SO0743at 761.992 kb on - strandat 761.992 kb on - strandat 762.042 kb on + strandat 762.084 kb on + strandat 762.084 kb on + strandat 762.084 kb on + strandat 762.092 kb on - strandat 762.092 kb on - strandat 762.103 kb on + strandat 762.137 kb on - strandat 762.160 kb on + strandat 762.220 kb on - strandat 762.227 kb on + strandat 762.251 kb on - strandat 762.295 kb on + strandat 762.368 kb on + strandat 762.368 kb on + strandat 762.368 kb on + strandat 762.386 kb on - strandat 762.405 kb on - strand, within SO0744at 762.639 kb on + strand, within SO0744at 762.649 kb on - strand, within SO0744at 762.686 kb on + strand, within SO0744at 762.694 kb on - strand, within SO0744at 762.755 kb on + strand, within SO0744at 762.763 kb on - strand, within SO0744at 762.763 kb on - strand, within SO0744at 762.775 kb on - strand, within SO0744at 762.819 kb on + strand, within SO0744at 762.985 kb on - strand, within SO0744at 763.015 kb on + strand, within SO0744

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Vanillin 2.5 mM
remove
759,530 + +1.3
759,538 - -0.2
759,538 - -0.2
759,538 - +1.0
759,538 - -1.2
759,538 - +0.3
759,538 - +1.2
759,566 - +0.4
759,843 - SO0742 0.35 -0.3
759,845 + SO0742 0.36 +0.3
759,853 - SO0742 0.36 +0.5
759,877 + SO0742 0.39 +0.8
759,886 - SO0742 0.39 +0.3
759,923 + SO0742 0.43 +0.6
759,930 - SO0742 0.44 -0.2
759,959 + SO0742 0.46 +0.9
759,969 + SO0742 0.47 +1.3
759,969 + SO0742 0.47 +0.9
759,969 + SO0742 0.47 +0.1
759,969 + SO0742 0.47 +0.2
759,969 + SO0742 0.47 +0.6
759,969 + SO0742 0.47 +0.1
759,969 + SO0742 0.47 +0.6
759,977 - SO0742 0.48 -0.9
759,977 - SO0742 0.48 -1.2
759,977 - SO0742 0.48 +0.8
759,977 - SO0742 0.48 +0.8
760,114 - SO0742 0.61 +1.2
760,114 - SO0742 0.61 -0.5
760,114 - SO0742 0.61 -0.4
760,127 + SO0742 0.62 -0.3
760,129 - SO0742 0.63 -0.7
760,132 + SO0742 0.63 +1.7
760,177 + SO0742 0.67 -1.8
760,178 + SO0742 0.67 -0.0
760,178 + SO0742 0.67 +0.5
760,186 - SO0742 0.68 +0.2
760,201 - SO0742 0.69 +1.0
760,208 + SO0742 0.70 -0.5
760,259 - SO0742 0.75 +0.6
760,259 - SO0742 0.75 -0.2
760,259 - SO0742 0.75 -0.1
760,285 - SO0742 0.77 -0.8
760,295 - SO0742 0.78 +1.5
760,376 + SO0742 0.86 -1.0
760,404 + SO0742 0.89 +0.1
760,412 - SO0742 0.90 -0.1
760,663 + +0.7
760,671 - -0.5
760,776 - SO0743 0.16 +0.7
760,776 - SO0743 0.16 +0.1
760,796 - SO0743 0.17 +0.1
760,799 + SO0743 0.17 +0.4
760,799 + SO0743 0.17 +0.4
760,799 + SO0743 0.17 +0.2
760,807 - SO0743 0.18 +0.6
760,807 - SO0743 0.18 -0.1
760,814 + SO0743 0.18 +0.7
760,822 - SO0743 0.19 -0.5
760,822 - SO0743 0.19 +0.2
760,853 - SO0743 0.20 +0.3
760,853 - SO0743 0.20 -0.1
760,928 + SO0743 0.25 +0.1
760,928 + SO0743 0.25 -0.7
760,928 + SO0743 0.25 -0.4
760,936 - SO0743 0.26 -0.1
760,937 - SO0743 0.26 +0.5
760,985 + SO0743 0.29 -0.0
760,985 + SO0743 0.29 -0.5
760,993 - SO0743 0.29 -0.4
760,993 - SO0743 0.29 -0.1
760,993 - SO0743 0.29 +0.1
760,993 - SO0743 0.29 -0.3
760,998 + SO0743 0.29 -0.6
761,006 - SO0743 0.30 +0.8
761,015 + +0.1
761,023 - +1.6
761,075 + SO0743 0.34 -0.6
761,083 - SO0743 0.35 +0.2
761,108 - SO0743 0.36 -0.5
761,152 - SO0743 0.39 +0.6
761,186 + SO0743 0.41 +0.3
761,194 - SO0743 0.41 +1.3
761,198 + SO0743 0.42 -0.1
761,291 + SO0743 0.47 -0.3
761,291 + SO0743 0.47 +0.4
761,310 - SO0743 0.48 +1.4
761,383 + SO0743 0.53 +0.8
761,419 + SO0743 0.55 -0.2
761,419 + SO0743 0.55 +0.9
761,419 + SO0743 0.55 -0.7
761,427 - SO0743 0.56 -0.6
761,472 - SO0743 0.58 -0.8
761,481 + SO0743 0.59 -0.4
761,559 + SO0743 0.64 -0.7
761,645 + SO0743 0.69 -1.6
761,729 + SO0743 0.74 -0.8
761,737 - SO0743 0.75 +0.3
761,739 - SO0743 0.75 -1.1
761,772 + SO0743 0.77 +1.3
761,778 + SO0743 0.77 -0.4
761,799 + SO0743 0.78 +0.5
761,799 + SO0743 0.78 +0.4
761,799 + SO0743 0.78 -0.2
761,807 - SO0743 0.79 +0.3
761,807 - SO0743 0.79 -0.3
761,807 - SO0743 0.79 -0.2
761,807 - SO0743 0.79 +0.0
761,828 + SO0743 0.80 -0.5
761,874 - SO0743 0.83 +0.1
761,943 - SO0743 0.87 +0.5
761,984 + SO0743 0.90 +0.1
761,992 - +1.6
761,992 - -0.2
762,042 + +0.4
762,084 + -0.0
762,084 + -0.5
762,084 + +0.3
762,092 - -1.5
762,092 - +0.4
762,103 + +0.6
762,137 - -0.1
762,160 + +0.1
762,220 - +1.4
762,227 + -1.7
762,251 - +0.6
762,295 + +0.6
762,368 + +0.2
762,368 + -0.0
762,368 + -0.8
762,386 - +1.0
762,405 - SO0744 0.12 -0.0
762,639 + SO0744 0.35 -0.1
762,649 - SO0744 0.36 +0.1
762,686 + SO0744 0.40 -0.8
762,694 - SO0744 0.40 +1.4
762,755 + SO0744 0.47 -1.8
762,763 - SO0744 0.47 -0.5
762,763 - SO0744 0.47 -0.5
762,775 - SO0744 0.49 -0.4
762,819 + SO0744 0.53 -0.8
762,985 - SO0744 0.69 -0.5
763,015 + SO0744 0.72 +0.9

Or see this region's nucleotide sequence