Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3314 and HP15_3315 are separated by 205 nucleotides HP15_3315 and HP15_3316 are separated by 26 nucleotides
HP15_3314: HP15_3314 - N-acetyllutamate synthase, at 3,473,698 to 3,475,005
_3314
HP15_3315: HP15_3315 - acetylornithine deacetylase (ArgE), at 3,475,211 to 3,476,380
_3315
HP15_3316: HP15_3316 - acetylornithine deacetylase, at 3,476,407 to 3,477,657
_3316
Position (kb)
3475
3476
3477 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 3474.238 kb on + strand, within HP15_3314 at 3474.267 kb on - strand, within HP15_3314 at 3474.456 kb on + strand, within HP15_3314 at 3474.641 kb on - strand, within HP15_3314 at 3474.672 kb on - strand, within HP15_3314 at 3474.846 kb on + strand, within HP15_3314 at 3474.854 kb on - strand, within HP15_3314 at 3474.856 kb on + strand, within HP15_3314 at 3475.072 kb on + strand at 3475.169 kb on + strand at 3475.258 kb on + strand at 3475.271 kb on - strand at 3475.271 kb on - strand at 3475.322 kb on + strand at 3475.416 kb on + strand, within HP15_3315 at 3475.416 kb on + strand, within HP15_3315 at 3475.416 kb on + strand, within HP15_3315 at 3475.424 kb on - strand, within HP15_3315 at 3475.451 kb on - strand, within HP15_3315 at 3475.463 kb on + strand, within HP15_3315 at 3475.492 kb on + strand, within HP15_3315 at 3475.521 kb on - strand, within HP15_3315 at 3475.583 kb on - strand, within HP15_3315 at 3475.604 kb on + strand, within HP15_3315 at 3475.648 kb on + strand, within HP15_3315 at 3475.765 kb on - strand, within HP15_3315 at 3475.878 kb on + strand, within HP15_3315 at 3475.886 kb on - strand, within HP15_3315 at 3475.915 kb on + strand, within HP15_3315 at 3475.953 kb on + strand, within HP15_3315 at 3476.079 kb on - strand, within HP15_3315 at 3476.079 kb on - strand, within HP15_3315 at 3476.192 kb on + strand, within HP15_3315 at 3476.249 kb on + strand, within HP15_3315 at 3476.255 kb on + strand, within HP15_3315 at 3476.306 kb on + strand at 3476.455 kb on + strand at 3476.455 kb on + strand at 3476.465 kb on + strand at 3476.670 kb on + strand, within HP15_3316 at 3476.670 kb on + strand, within HP15_3316 at 3476.678 kb on - strand, within HP15_3316 at 3476.678 kb on - strand, within HP15_3316 at 3476.724 kb on + strand, within HP15_3316 at 3476.845 kb on - strand, within HP15_3316 at 3477.086 kb on + strand, within HP15_3316 at 3477.086 kb on + strand, within HP15_3316 at 3477.104 kb on - strand, within HP15_3316 at 3477.112 kb on + strand, within HP15_3316 at 3477.123 kb on - strand, within HP15_3316 at 3477.204 kb on - strand, within HP15_3316 at 3477.204 kb on - strand, within HP15_3316 at 3477.236 kb on - strand, within HP15_3316 at 3477.323 kb on - strand, within HP15_3316 at 3477.323 kb on - strand, within HP15_3316 at 3477.327 kb on + strand, within HP15_3316 at 3477.327 kb on + strand, within HP15_3316 at 3477.327 kb on + strand, within HP15_3316 at 3477.327 kb on + strand, within HP15_3316 at 3477.327 kb on + strand, within HP15_3316 at 3477.327 kb on + strand, within HP15_3316 at 3477.335 kb on - strand, within HP15_3316 at 3477.335 kb on - strand, within HP15_3316 at 3477.350 kb on + strand, within HP15_3316
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 3,474,238 + HP15_3314 0.41 -4.5 3,474,267 - HP15_3314 0.44 -3.9 3,474,456 + HP15_3314 0.58 -5.5 3,474,641 - HP15_3314 0.72 -3.3 3,474,672 - HP15_3314 0.74 -5.5 3,474,846 + HP15_3314 0.88 -2.6 3,474,854 - HP15_3314 0.88 -2.6 3,474,856 + HP15_3314 0.89 -6.0 3,475,072 + +0.2 3,475,169 + -0.1 3,475,258 + -0.9 3,475,271 - -0.2 3,475,271 - +0.4 3,475,322 + -0.2 3,475,416 + HP15_3315 0.18 +0.5 3,475,416 + HP15_3315 0.18 -0.8 3,475,416 + HP15_3315 0.18 +0.2 3,475,424 - HP15_3315 0.18 -0.5 3,475,451 - HP15_3315 0.21 -0.0 3,475,463 + HP15_3315 0.22 +0.0 3,475,492 + HP15_3315 0.24 -0.1 3,475,521 - HP15_3315 0.26 +0.5 3,475,583 - HP15_3315 0.32 -1.1 3,475,604 + HP15_3315 0.34 -0.4 3,475,648 + HP15_3315 0.37 +0.1 3,475,765 - HP15_3315 0.47 +0.3 3,475,878 + HP15_3315 0.57 +0.7 3,475,886 - HP15_3315 0.58 -1.3 3,475,915 + HP15_3315 0.60 +0.2 3,475,953 + HP15_3315 0.63 -0.1 3,476,079 - HP15_3315 0.74 +0.4 3,476,079 - HP15_3315 0.74 +0.3 3,476,192 + HP15_3315 0.84 -0.0 3,476,249 + HP15_3315 0.89 +0.5 3,476,255 + HP15_3315 0.89 +0.7 3,476,306 + -0.8 3,476,455 + +0.3 3,476,455 + +0.6 3,476,465 + +0.6 3,476,670 + HP15_3316 0.21 +0.1 3,476,670 + HP15_3316 0.21 -0.0 3,476,678 - HP15_3316 0.22 +0.0 3,476,678 - HP15_3316 0.22 +0.6 3,476,724 + HP15_3316 0.25 +0.1 3,476,845 - HP15_3316 0.35 +0.0 3,477,086 + HP15_3316 0.54 +0.5 3,477,086 + HP15_3316 0.54 +0.8 3,477,104 - HP15_3316 0.56 +0.5 3,477,112 + HP15_3316 0.56 +0.6 3,477,123 - HP15_3316 0.57 -0.0 3,477,204 - HP15_3316 0.64 +1.5 3,477,204 - HP15_3316 0.64 -0.1 3,477,236 - HP15_3316 0.66 -1.5 3,477,323 - HP15_3316 0.73 +0.6 3,477,323 - HP15_3316 0.73 +0.3 3,477,327 + HP15_3316 0.74 +0.4 3,477,327 + HP15_3316 0.74 +0.7 3,477,327 + HP15_3316 0.74 -0.2 3,477,327 + HP15_3316 0.74 +0.1 3,477,327 + HP15_3316 0.74 -0.3 3,477,327 + HP15_3316 0.74 +0.5 3,477,335 - HP15_3316 0.74 +0.7 3,477,335 - HP15_3316 0.74 +0.1 3,477,350 + HP15_3316 0.75 -0.3
Or see this region's nucleotide sequence