Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3312 and HP15_3313 are separated by 171 nucleotides HP15_3313 and HP15_3314 overlap by 27 nucleotides
HP15_3312: HP15_3312 - diguanylate cyclase/phosphodiesterase, at 3,468,721 to 3,472,482
_3312
HP15_3313: HP15_3313 - zinc protease protein, at 3,472,654 to 3,473,724
_3313
HP15_3314: HP15_3314 - N-acetyllutamate synthase, at 3,473,698 to 3,475,005
_3314
Position (kb) 3472
3473
3474 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 3471.873 kb on - strand, within HP15_3312 at 3472.039 kb on - strand, within HP15_3312 at 3472.070 kb on + strand, within HP15_3312 at 3472.184 kb on + strand at 3472.301 kb on - strand at 3472.511 kb on - strand at 3472.513 kb on - strand at 3472.802 kb on + strand, within HP15_3313 at 3472.802 kb on + strand, within HP15_3313 at 3472.802 kb on + strand, within HP15_3313 at 3472.928 kb on + strand, within HP15_3313 at 3472.931 kb on - strand, within HP15_3313 at 3472.933 kb on + strand, within HP15_3313 at 3472.941 kb on + strand, within HP15_3313 at 3473.089 kb on - strand, within HP15_3313 at 3473.105 kb on + strand, within HP15_3313 at 3473.139 kb on - strand, within HP15_3313 at 3473.151 kb on - strand, within HP15_3313 at 3473.208 kb on + strand, within HP15_3313 at 3473.209 kb on - strand, within HP15_3313 at 3473.218 kb on + strand, within HP15_3313 at 3473.242 kb on + strand, within HP15_3313 at 3473.295 kb on + strand, within HP15_3313 at 3473.308 kb on - strand, within HP15_3313 at 3473.320 kb on + strand, within HP15_3313 at 3473.320 kb on + strand, within HP15_3313 at 3473.482 kb on - strand, within HP15_3313 at 3473.509 kb on - strand, within HP15_3313 at 3473.611 kb on + strand, within HP15_3313 at 3473.743 kb on - strand at 3473.751 kb on + strand at 3473.766 kb on + strand at 3473.767 kb on + strand at 3473.863 kb on - strand, within HP15_3314 at 3473.876 kb on - strand, within HP15_3314 at 3473.960 kb on + strand, within HP15_3314 at 3473.965 kb on + strand, within HP15_3314 at 3473.971 kb on - strand, within HP15_3314 at 3473.973 kb on + strand, within HP15_3314 at 3473.976 kb on - strand, within HP15_3314 at 3474.091 kb on - strand, within HP15_3314 at 3474.152 kb on + strand, within HP15_3314 at 3474.160 kb on - strand, within HP15_3314 at 3474.160 kb on - strand, within HP15_3314 at 3474.238 kb on + strand, within HP15_3314 at 3474.267 kb on - strand, within HP15_3314 at 3474.456 kb on + strand, within HP15_3314 at 3474.641 kb on - strand, within HP15_3314 at 3474.672 kb on - strand, within HP15_3314
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 3,471,873 - HP15_3312 0.84 +2.6 3,472,039 - HP15_3312 0.88 -0.2 3,472,070 + HP15_3312 0.89 +1.4 3,472,184 + +0.0 3,472,301 - -0.3 3,472,511 - -0.1 3,472,513 - -0.3 3,472,802 + HP15_3313 0.14 -0.0 3,472,802 + HP15_3313 0.14 +1.0 3,472,802 + HP15_3313 0.14 +0.7 3,472,928 + HP15_3313 0.26 -0.3 3,472,931 - HP15_3313 0.26 +0.0 3,472,933 + HP15_3313 0.26 +0.7 3,472,941 + HP15_3313 0.27 +0.5 3,473,089 - HP15_3313 0.41 +0.6 3,473,105 + HP15_3313 0.42 -0.2 3,473,139 - HP15_3313 0.45 +0.5 3,473,151 - HP15_3313 0.46 +0.5 3,473,208 + HP15_3313 0.52 -0.3 3,473,209 - HP15_3313 0.52 -0.4 3,473,218 + HP15_3313 0.53 +1.2 3,473,242 + HP15_3313 0.55 +0.4 3,473,295 + HP15_3313 0.60 -0.1 3,473,308 - HP15_3313 0.61 +0.6 3,473,320 + HP15_3313 0.62 +0.6 3,473,320 + HP15_3313 0.62 +0.9 3,473,482 - HP15_3313 0.77 -0.2 3,473,509 - HP15_3313 0.80 -0.4 3,473,611 + HP15_3313 0.89 +0.0 3,473,743 - -4.6 3,473,751 + -5.0 3,473,766 + -2.1 3,473,767 + -4.6 3,473,863 - HP15_3314 0.13 -3.0 3,473,876 - HP15_3314 0.14 -6.0 3,473,960 + HP15_3314 0.20 -4.2 3,473,965 + HP15_3314 0.20 -4.6 3,473,971 - HP15_3314 0.21 -3.3 3,473,973 + HP15_3314 0.21 -1.6 3,473,976 - HP15_3314 0.21 -5.0 3,474,091 - HP15_3314 0.30 -3.2 3,474,152 + HP15_3314 0.35 -3.0 3,474,160 - HP15_3314 0.35 -4.7 3,474,160 - HP15_3314 0.35 -4.7 3,474,238 + HP15_3314 0.41 -4.5 3,474,267 - HP15_3314 0.44 -3.9 3,474,456 + HP15_3314 0.58 -5.5 3,474,641 - HP15_3314 0.72 -3.3 3,474,672 - HP15_3314 0.74 -5.5
Or see this region's nucleotide sequence