Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2739 and HP15_2740 are separated by 471 nucleotides HP15_2740 and HP15_2741 are separated by 89 nucleotides
HP15_2739: HP15_2739 - DNA-3-methyladenine glycosidase II, at 2,891,346 to 2,891,975
_2739
HP15_2740: HP15_2740 - membrane protein containing DUF6, transmembrane, at 2,892,447 to 2,893,343
_2740
HP15_2741: HP15_2741 - transcriptional regulator, AraC family protein, at 2,893,433 to 2,894,359
_2741
Position (kb)
2892
2893
2894 Strain fitness (log2 ratio)
-1
0
1
2 at 2891.620 kb on + strand, within HP15_2739 at 2891.687 kb on - strand, within HP15_2739 at 2891.756 kb on + strand, within HP15_2739 at 2891.787 kb on + strand, within HP15_2739 at 2891.787 kb on + strand, within HP15_2739 at 2891.812 kb on - strand, within HP15_2739 at 2891.911 kb on - strand, within HP15_2739 at 2891.970 kb on - strand at 2892.023 kb on + strand at 2892.041 kb on - strand at 2892.085 kb on + strand at 2892.136 kb on + strand at 2892.144 kb on - strand at 2892.156 kb on + strand at 2892.225 kb on - strand at 2892.237 kb on - strand at 2892.237 kb on - strand at 2892.270 kb on + strand at 2892.307 kb on - strand at 2892.317 kb on - strand at 2892.425 kb on - strand at 2892.442 kb on - strand at 2892.614 kb on + strand, within HP15_2740 at 2892.726 kb on - strand, within HP15_2740 at 2892.766 kb on + strand, within HP15_2740 at 2892.786 kb on + strand, within HP15_2740 at 2892.817 kb on - strand, within HP15_2740 at 2892.926 kb on - strand, within HP15_2740 at 2893.000 kb on + strand, within HP15_2740 at 2893.008 kb on - strand, within HP15_2740 at 2893.092 kb on + strand, within HP15_2740 at 2893.092 kb on + strand, within HP15_2740 at 2893.092 kb on + strand, within HP15_2740 at 2893.092 kb on + strand, within HP15_2740 at 2893.092 kb on + strand, within HP15_2740 at 2893.100 kb on - strand, within HP15_2740 at 2893.100 kb on - strand, within HP15_2740 at 2893.138 kb on - strand, within HP15_2740 at 2893.266 kb on - strand at 2893.275 kb on + strand at 2893.278 kb on - strand at 2893.303 kb on + strand at 2893.318 kb on - strand at 2893.354 kb on + strand at 2893.436 kb on - strand at 2893.464 kb on + strand at 2893.622 kb on + strand, within HP15_2741 at 2893.622 kb on + strand, within HP15_2741 at 2893.643 kb on - strand, within HP15_2741 at 2893.654 kb on + strand, within HP15_2741 at 2893.662 kb on - strand, within HP15_2741 at 2893.664 kb on - strand, within HP15_2741 at 2893.686 kb on - strand, within HP15_2741 at 2893.729 kb on + strand, within HP15_2741 at 2893.914 kb on + strand, within HP15_2741 at 2894.006 kb on + strand, within HP15_2741 at 2894.080 kb on - strand, within HP15_2741 at 2894.080 kb on - strand, within HP15_2741 at 2894.080 kb on - strand, within HP15_2741 at 2894.164 kb on - strand, within HP15_2741 at 2894.164 kb on - strand, within HP15_2741 at 2894.183 kb on + strand, within HP15_2741 at 2894.196 kb on + strand, within HP15_2741 at 2894.273 kb on - strand at 2894.279 kb on + strand at 2894.319 kb on + strand at 2894.341 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 2,891,620 + HP15_2739 0.43 -0.2 2,891,687 - HP15_2739 0.54 +0.1 2,891,756 + HP15_2739 0.65 +0.5 2,891,787 + HP15_2739 0.70 +0.3 2,891,787 + HP15_2739 0.70 +0.7 2,891,812 - HP15_2739 0.74 -0.0 2,891,911 - HP15_2739 0.90 +0.6 2,891,970 - -0.5 2,892,023 + -0.4 2,892,041 - -0.3 2,892,085 + -0.6 2,892,136 + -0.3 2,892,144 - -0.2 2,892,156 + +0.6 2,892,225 - +0.4 2,892,237 - +2.3 2,892,237 - -0.0 2,892,270 + +0.3 2,892,307 - +0.8 2,892,317 - -0.4 2,892,425 - -0.6 2,892,442 - +0.9 2,892,614 + HP15_2740 0.19 -0.8 2,892,726 - HP15_2740 0.31 +0.2 2,892,766 + HP15_2740 0.36 -0.8 2,892,786 + HP15_2740 0.38 -0.5 2,892,817 - HP15_2740 0.41 -0.1 2,892,926 - HP15_2740 0.53 +0.6 2,893,000 + HP15_2740 0.62 -0.8 2,893,008 - HP15_2740 0.63 -0.4 2,893,092 + HP15_2740 0.72 -0.5 2,893,092 + HP15_2740 0.72 +0.3 2,893,092 + HP15_2740 0.72 +0.8 2,893,092 + HP15_2740 0.72 -0.8 2,893,092 + HP15_2740 0.72 -0.1 2,893,100 - HP15_2740 0.73 -0.5 2,893,100 - HP15_2740 0.73 -0.8 2,893,138 - HP15_2740 0.77 -0.3 2,893,266 - +0.4 2,893,275 + +1.4 2,893,278 - -0.4 2,893,303 + +0.6 2,893,318 - +0.4 2,893,354 + -0.0 2,893,436 - -0.1 2,893,464 + +0.4 2,893,622 + HP15_2741 0.20 +0.2 2,893,622 + HP15_2741 0.20 +0.3 2,893,643 - HP15_2741 0.23 -0.9 2,893,654 + HP15_2741 0.24 +0.4 2,893,662 - HP15_2741 0.25 -0.7 2,893,664 - HP15_2741 0.25 -0.6 2,893,686 - HP15_2741 0.27 -0.4 2,893,729 + HP15_2741 0.32 -0.5 2,893,914 + HP15_2741 0.52 +0.6 2,894,006 + HP15_2741 0.62 -0.3 2,894,080 - HP15_2741 0.70 +0.3 2,894,080 - HP15_2741 0.70 -0.2 2,894,080 - HP15_2741 0.70 +0.0 2,894,164 - HP15_2741 0.79 +0.5 2,894,164 - HP15_2741 0.79 +0.6 2,894,183 + HP15_2741 0.81 +0.1 2,894,196 + HP15_2741 0.82 -0.3 2,894,273 - -0.0 2,894,279 + +1.2 2,894,319 + -0.5 2,894,341 + -0.1
Or see this region's nucleotide sequence