Strain Fitness in Shewanella amazonensis SB2B around Sama_0775

Experiment: 5-Hydroxymethylfurfural 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0773 and Sama_0774 are separated by 47 nucleotidesSama_0774 and panC are separated by 191 nucleotidespanC and panB are separated by 7 nucleotidespanB and Sama_0777 are separated by 13 nucleotides Sama_0773: Sama_0773 - ABC-type polysaccharide/polyol phosphate export systems permease component (RefSeq), at 956,447 to 957,217 _0773 Sama_0774: Sama_0774 - hypothetical protein (RefSeq), at 957,265 to 957,765 _0774 Sama_0775: panC - pantoate--beta-alanine ligase (RefSeq), at 957,957 to 958,802 panC Sama_0776: panB - 3-methyl-2-oxobutanoate hydroxymethyltransferase (RefSeq), at 958,810 to 959,649 panB Sama_0777: Sama_0777 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase (RefSeq), at 959,663 to 960,151 _0777 Position (kb) 957 958 959Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 956.963 kb on - strand, within Sama_0773at 956.993 kb on + strand, within Sama_0773at 956.993 kb on + strand, within Sama_0773at 956.993 kb on + strand, within Sama_0773at 956.994 kb on - strand, within Sama_0773at 956.994 kb on - strand, within Sama_0773at 957.007 kb on - strand, within Sama_0773at 957.011 kb on + strand, within Sama_0773at 957.011 kb on + strand, within Sama_0773at 957.011 kb on + strand, within Sama_0773at 957.011 kb on + strand, within Sama_0773at 957.011 kb on + strand, within Sama_0773at 957.057 kb on + strand, within Sama_0773at 957.057 kb on + strand, within Sama_0773at 957.071 kb on + strand, within Sama_0773at 957.072 kb on - strand, within Sama_0773at 957.078 kb on + strand, within Sama_0773at 957.078 kb on + strand, within Sama_0773at 957.078 kb on + strand, within Sama_0773at 957.078 kb on + strand, within Sama_0773at 957.079 kb on - strand, within Sama_0773at 957.079 kb on - strand, within Sama_0773at 957.079 kb on - strand, within Sama_0773at 957.179 kb on + strandat 957.179 kb on + strandat 957.179 kb on + strandat 957.179 kb on + strandat 957.182 kb on + strandat 957.230 kb on + strandat 957.249 kb on + strandat 957.249 kb on + strandat 957.266 kb on + strandat 957.267 kb on - strandat 957.379 kb on + strand, within Sama_0774at 957.379 kb on + strand, within Sama_0774at 957.383 kb on + strand, within Sama_0774at 957.463 kb on + strand, within Sama_0774at 957.463 kb on + strand, within Sama_0774at 957.463 kb on + strand, within Sama_0774at 957.463 kb on + strand, within Sama_0774at 957.463 kb on + strand, within Sama_0774at 957.463 kb on + strand, within Sama_0774at 957.463 kb on + strand, within Sama_0774at 957.463 kb on + strand, within Sama_0774at 957.463 kb on + strand, within Sama_0774at 957.463 kb on + strand, within Sama_0774at 957.463 kb on + strand, within Sama_0774at 957.464 kb on - strand, within Sama_0774at 957.464 kb on - strand, within Sama_0774at 957.464 kb on - strand, within Sama_0774at 957.464 kb on - strand, within Sama_0774at 957.464 kb on - strand, within Sama_0774at 957.464 kb on - strand, within Sama_0774at 957.464 kb on - strand, within Sama_0774at 957.464 kb on - strand, within Sama_0774at 957.464 kb on - strand, within Sama_0774at 957.464 kb on - strand, within Sama_0774at 957.464 kb on - strand, within Sama_0774at 957.464 kb on - strand, within Sama_0774at 957.467 kb on + strand, within Sama_0774at 957.467 kb on + strand, within Sama_0774at 957.467 kb on + strand, within Sama_0774at 957.468 kb on - strand, within Sama_0774at 957.468 kb on - strand, within Sama_0774at 957.668 kb on + strand, within Sama_0774at 957.668 kb on + strand, within Sama_0774at 957.669 kb on - strand, within Sama_0774at 957.669 kb on - strand, within Sama_0774at 957.696 kb on + strand, within Sama_0774at 957.696 kb on + strand, within Sama_0774at 957.697 kb on - strand, within Sama_0774at 957.698 kb on + strand, within Sama_0774at 957.699 kb on - strand, within Sama_0774at 957.699 kb on - strand, within Sama_0774at 957.699 kb on - strand, within Sama_0774at 957.699 kb on - strand, within Sama_0774at 957.739 kb on + strandat 957.739 kb on + strandat 957.739 kb on + strandat 957.739 kb on + strandat 957.739 kb on + strandat 957.739 kb on + strandat 957.739 kb on + strandat 957.740 kb on - strandat 957.740 kb on - strandat 957.740 kb on - strandat 957.740 kb on - strandat 957.740 kb on - strandat 957.801 kb on - strandat 957.878 kb on + strandat 957.878 kb on + strandat 957.879 kb on - strandat 957.882 kb on + strandat 957.882 kb on + strandat 957.882 kb on + strandat 957.942 kb on + strandat 957.942 kb on + strandat 957.942 kb on + strandat 957.942 kb on + strandat 957.942 kb on + strandat 957.942 kb on + strandat 957.942 kb on + strandat 957.942 kb on + strandat 957.942 kb on + strandat 957.942 kb on + strandat 957.943 kb on - strandat 957.943 kb on - strandat 957.943 kb on - strandat 957.943 kb on - strandat 957.943 kb on - strandat 957.943 kb on - strandat 957.943 kb on - strandat 957.943 kb on - strandat 957.943 kb on - strandat 957.943 kb on - strandat 957.959 kb on - strandat 957.959 kb on - strandat 957.977 kb on + strandat 957.978 kb on - strandat 958.799 kb on - strandat 958.799 kb on - strandat 958.822 kb on - strandat 958.822 kb on - strandat 958.822 kb on - strandat 958.822 kb on - strandat 958.822 kb on - strandat 959.641 kb on - strandat 959.643 kb on - strandat 959.643 kb on - strandat 959.643 kb on - strandat 959.643 kb on - strandat 959.643 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM
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956,963 - Sama_0773 0.67 +0.2
956,993 + Sama_0773 0.71 +0.7
956,993 + Sama_0773 0.71 -0.1
956,993 + Sama_0773 0.71 +0.9
956,994 - Sama_0773 0.71 +0.8
956,994 - Sama_0773 0.71 -0.0
957,007 - Sama_0773 0.73 -1.1
957,011 + Sama_0773 0.73 +1.0
957,011 + Sama_0773 0.73 +1.0
957,011 + Sama_0773 0.73 +0.4
957,011 + Sama_0773 0.73 -1.0
957,011 + Sama_0773 0.73 +0.3
957,057 + Sama_0773 0.79 -1.1
957,057 + Sama_0773 0.79 +0.1
957,071 + Sama_0773 0.81 +0.2
957,072 - Sama_0773 0.81 +0.2
957,078 + Sama_0773 0.82 -0.2
957,078 + Sama_0773 0.82 +1.3
957,078 + Sama_0773 0.82 -0.1
957,078 + Sama_0773 0.82 +1.5
957,079 - Sama_0773 0.82 +0.1
957,079 - Sama_0773 0.82 -0.8
957,079 - Sama_0773 0.82 +0.1
957,179 + +3.8
957,179 + +0.4
957,179 + +0.3
957,179 + +0.8
957,182 + -0.4
957,230 + -1.8
957,249 + -0.7
957,249 + -0.5
957,266 + -0.1
957,267 - -2.4
957,379 + Sama_0774 0.23 +0.4
957,379 + Sama_0774 0.23 -0.5
957,383 + Sama_0774 0.24 +1.3
957,463 + Sama_0774 0.40 +0.3
957,463 + Sama_0774 0.40 +0.6
957,463 + Sama_0774 0.40 +0.5
957,463 + Sama_0774 0.40 +1.3
957,463 + Sama_0774 0.40 +0.9
957,463 + Sama_0774 0.40 +0.3
957,463 + Sama_0774 0.40 -0.2
957,463 + Sama_0774 0.40 +0.6
957,463 + Sama_0774 0.40 +0.3
957,463 + Sama_0774 0.40 +0.2
957,463 + Sama_0774 0.40 +0.0
957,464 - Sama_0774 0.40 -2.1
957,464 - Sama_0774 0.40 +1.9
957,464 - Sama_0774 0.40 -0.1
957,464 - Sama_0774 0.40 +1.0
957,464 - Sama_0774 0.40 +1.3
957,464 - Sama_0774 0.40 -0.3
957,464 - Sama_0774 0.40 +0.2
957,464 - Sama_0774 0.40 -0.2
957,464 - Sama_0774 0.40 +0.5
957,464 - Sama_0774 0.40 +0.9
957,464 - Sama_0774 0.40 -0.3
957,464 - Sama_0774 0.40 +0.0
957,467 + Sama_0774 0.40 +0.0
957,467 + Sama_0774 0.40 +0.7
957,467 + Sama_0774 0.40 -0.8
957,468 - Sama_0774 0.41 -0.3
957,468 - Sama_0774 0.41 +0.1
957,668 + Sama_0774 0.80 +0.1
957,668 + Sama_0774 0.80 +0.2
957,669 - Sama_0774 0.81 +0.3
957,669 - Sama_0774 0.81 +0.9
957,696 + Sama_0774 0.86 +1.7
957,696 + Sama_0774 0.86 +1.7
957,697 - Sama_0774 0.86 +0.8
957,698 + Sama_0774 0.86 +0.4
957,699 - Sama_0774 0.87 +1.0
957,699 - Sama_0774 0.87 +0.2
957,699 - Sama_0774 0.87 +0.3
957,699 - Sama_0774 0.87 +0.8
957,739 + -0.1
957,739 + -0.3
957,739 + -0.3
957,739 + +0.3
957,739 + +1.3
957,739 + +0.7
957,739 + -0.4
957,740 - +0.3
957,740 - -0.7
957,740 - -1.7
957,740 - -0.6
957,740 - +0.2
957,801 - -0.4
957,878 + +0.3
957,878 + +0.6
957,879 - -0.1
957,882 + -0.0
957,882 + -1.0
957,882 + +0.6
957,942 + -0.9
957,942 + +0.3
957,942 + +0.1
957,942 + +1.8
957,942 + -0.1
957,942 + -0.8
957,942 + +0.3
957,942 + +0.1
957,942 + +0.1
957,942 + -0.2
957,943 - -0.6
957,943 - +0.3
957,943 - -0.0
957,943 - +0.3
957,943 - +1.0
957,943 - +0.3
957,943 - -0.5
957,943 - -0.4
957,943 - +0.3
957,943 - +0.0
957,959 - +0.3
957,959 - -0.1
957,977 + +1.7
957,978 - -0.3
958,799 - -1.4
958,799 - +1.3
958,822 - -0.2
958,822 - +0.6
958,822 - +0.3
958,822 - +1.3
958,822 - +0.7
959,641 - +0.3
959,643 - +0.8
959,643 - -0.6
959,643 - +0.2
959,643 - -0.3
959,643 - -0.2

Or see this region's nucleotide sequence