Strain Fitness in Shewanella amazonensis SB2B around Sama_0773

Experiment: 5-Hydroxymethylfurfural 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0772 and Sama_0773 are separated by 1 nucleotidesSama_0773 and Sama_0774 are separated by 47 nucleotidesSama_0774 and panC are separated by 191 nucleotides Sama_0772: Sama_0772 - ABC transporter, ATP-binding protein (RefSeq), at 955,486 to 956,445 _0772 Sama_0773: Sama_0773 - ABC-type polysaccharide/polyol phosphate export systems permease component (RefSeq), at 956,447 to 957,217 _0773 Sama_0774: Sama_0774 - hypothetical protein (RefSeq), at 957,265 to 957,765 _0774 Sama_0775: panC - pantoate--beta-alanine ligase (RefSeq), at 957,957 to 958,802 panC Position (kb) 956 957 958Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 955.530 kb on + strandat 955.540 kb on + strandat 955.541 kb on - strandat 955.541 kb on - strandat 955.635 kb on + strand, within Sama_0772at 955.636 kb on - strand, within Sama_0772at 955.643 kb on + strand, within Sama_0772at 955.643 kb on + strand, within Sama_0772at 955.643 kb on + strand, within Sama_0772at 955.644 kb on - strand, within Sama_0772at 955.644 kb on - strand, within Sama_0772at 955.644 kb on - strand, within Sama_0772at 955.644 kb on - strand, within Sama_0772at 955.650 kb on + strand, within Sama_0772at 955.651 kb on - strand, within Sama_0772at 955.674 kb on + strand, within Sama_0772at 955.685 kb on + strand, within Sama_0772at 955.685 kb on + strand, within Sama_0772at 955.685 kb on + strand, within Sama_0772at 955.737 kb on + strand, within Sama_0772at 955.784 kb on + strand, within Sama_0772at 955.813 kb on + strand, within Sama_0772at 955.814 kb on - strand, within Sama_0772at 955.814 kb on - strand, within Sama_0772at 955.891 kb on - strand, within Sama_0772at 956.067 kb on + strand, within Sama_0772at 956.068 kb on - strand, within Sama_0772at 956.083 kb on + strand, within Sama_0772at 956.084 kb on - strand, within Sama_0772at 956.116 kb on - strand, within Sama_0772at 956.261 kb on + strand, within Sama_0772at 956.262 kb on - strand, within Sama_0772at 956.262 kb on - strand, within Sama_0772at 956.343 kb on - strand, within Sama_0772at 956.343 kb on - strand, within Sama_0772at 956.364 kb on + strandat 956.365 kb on - strandat 956.459 kb on + strandat 956.460 kb on - strandat 956.460 kb on - strandat 956.460 kb on - strandat 956.513 kb on - strandat 956.558 kb on + strand, within Sama_0773at 956.559 kb on - strand, within Sama_0773at 956.559 kb on - strand, within Sama_0773at 956.614 kb on + strand, within Sama_0773at 956.614 kb on + strand, within Sama_0773at 956.615 kb on - strand, within Sama_0773at 956.618 kb on + strand, within Sama_0773at 956.618 kb on + strand, within Sama_0773at 956.618 kb on + strand, within Sama_0773at 956.618 kb on + strand, within Sama_0773at 956.618 kb on + strand, within Sama_0773at 956.618 kb on + strand, within Sama_0773at 956.618 kb on + strand, within Sama_0773at 956.619 kb on - strand, within Sama_0773at 956.619 kb on - strand, within Sama_0773at 956.619 kb on - strand, within Sama_0773at 956.629 kb on + strand, within Sama_0773at 956.630 kb on - strand, within Sama_0773at 956.672 kb on + strand, within Sama_0773at 956.731 kb on + strand, within Sama_0773at 956.732 kb on - strand, within Sama_0773at 956.732 kb on - strand, within Sama_0773at 956.753 kb on + strand, within Sama_0773at 956.753 kb on + strand, within Sama_0773at 956.753 kb on + strand, within Sama_0773at 956.754 kb on - strand, within Sama_0773at 956.772 kb on - strand, within Sama_0773at 956.815 kb on - strand, within Sama_0773at 956.920 kb on + strand, within Sama_0773at 956.963 kb on - strand, within Sama_0773at 956.993 kb on + strand, within Sama_0773at 956.993 kb on + strand, within Sama_0773at 956.993 kb on + strand, within Sama_0773at 956.994 kb on - strand, within Sama_0773at 956.994 kb on - strand, within Sama_0773at 957.007 kb on - strand, within Sama_0773at 957.011 kb on + strand, within Sama_0773at 957.011 kb on + strand, within Sama_0773at 957.011 kb on + strand, within Sama_0773at 957.011 kb on + strand, within Sama_0773at 957.011 kb on + strand, within Sama_0773at 957.057 kb on + strand, within Sama_0773at 957.057 kb on + strand, within Sama_0773at 957.071 kb on + strand, within Sama_0773at 957.072 kb on - strand, within Sama_0773at 957.078 kb on + strand, within Sama_0773at 957.078 kb on + strand, within Sama_0773at 957.078 kb on + strand, within Sama_0773at 957.078 kb on + strand, within Sama_0773at 957.079 kb on - strand, within Sama_0773at 957.079 kb on - strand, within Sama_0773at 957.079 kb on - strand, within Sama_0773at 957.179 kb on + strandat 957.179 kb on + strandat 957.179 kb on + strandat 957.179 kb on + strandat 957.182 kb on + strandat 957.230 kb on + strandat 957.249 kb on + strandat 957.249 kb on + strandat 957.266 kb on + strandat 957.267 kb on - strandat 957.379 kb on + strand, within Sama_0774at 957.379 kb on + strand, within Sama_0774at 957.383 kb on + strand, within Sama_0774at 957.463 kb on + strand, within Sama_0774at 957.463 kb on + strand, within Sama_0774at 957.463 kb on + strand, within Sama_0774at 957.463 kb on + strand, within Sama_0774at 957.463 kb on + strand, within Sama_0774at 957.463 kb on + strand, within Sama_0774at 957.463 kb on + strand, within Sama_0774at 957.463 kb on + strand, within Sama_0774at 957.463 kb on + strand, within Sama_0774at 957.463 kb on + strand, within Sama_0774at 957.463 kb on + strand, within Sama_0774at 957.464 kb on - strand, within Sama_0774at 957.464 kb on - strand, within Sama_0774at 957.464 kb on - strand, within Sama_0774at 957.464 kb on - strand, within Sama_0774at 957.464 kb on - strand, within Sama_0774at 957.464 kb on - strand, within Sama_0774at 957.464 kb on - strand, within Sama_0774at 957.464 kb on - strand, within Sama_0774at 957.464 kb on - strand, within Sama_0774at 957.464 kb on - strand, within Sama_0774at 957.464 kb on - strand, within Sama_0774at 957.464 kb on - strand, within Sama_0774at 957.467 kb on + strand, within Sama_0774at 957.467 kb on + strand, within Sama_0774at 957.467 kb on + strand, within Sama_0774at 957.468 kb on - strand, within Sama_0774at 957.468 kb on - strand, within Sama_0774at 957.668 kb on + strand, within Sama_0774at 957.668 kb on + strand, within Sama_0774at 957.669 kb on - strand, within Sama_0774at 957.669 kb on - strand, within Sama_0774at 957.696 kb on + strand, within Sama_0774at 957.696 kb on + strand, within Sama_0774at 957.697 kb on - strand, within Sama_0774at 957.698 kb on + strand, within Sama_0774at 957.699 kb on - strand, within Sama_0774at 957.699 kb on - strand, within Sama_0774at 957.699 kb on - strand, within Sama_0774at 957.699 kb on - strand, within Sama_0774at 957.739 kb on + strandat 957.739 kb on + strandat 957.739 kb on + strandat 957.739 kb on + strandat 957.739 kb on + strandat 957.739 kb on + strandat 957.739 kb on + strandat 957.740 kb on - strandat 957.740 kb on - strandat 957.740 kb on - strandat 957.740 kb on - strandat 957.740 kb on - strandat 957.801 kb on - strandat 957.878 kb on + strandat 957.878 kb on + strandat 957.879 kb on - strandat 957.882 kb on + strandat 957.882 kb on + strandat 957.882 kb on + strandat 957.942 kb on + strandat 957.942 kb on + strandat 957.942 kb on + strandat 957.942 kb on + strandat 957.942 kb on + strandat 957.942 kb on + strandat 957.942 kb on + strandat 957.942 kb on + strandat 957.942 kb on + strandat 957.942 kb on + strandat 957.943 kb on - strandat 957.943 kb on - strandat 957.943 kb on - strandat 957.943 kb on - strandat 957.943 kb on - strandat 957.943 kb on - strandat 957.943 kb on - strandat 957.943 kb on - strandat 957.943 kb on - strandat 957.943 kb on - strandat 957.959 kb on - strandat 957.959 kb on - strandat 957.977 kb on + strandat 957.978 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM
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955,530 + -0.2
955,540 + +0.4
955,541 - +0.0
955,541 - -1.8
955,635 + Sama_0772 0.16 -0.4
955,636 - Sama_0772 0.16 -1.6
955,643 + Sama_0772 0.16 -0.8
955,643 + Sama_0772 0.16 +0.3
955,643 + Sama_0772 0.16 +0.0
955,644 - Sama_0772 0.16 +1.5
955,644 - Sama_0772 0.16 +0.1
955,644 - Sama_0772 0.16 -0.3
955,644 - Sama_0772 0.16 -0.9
955,650 + Sama_0772 0.17 -0.7
955,651 - Sama_0772 0.17 -0.6
955,674 + Sama_0772 0.20 -0.2
955,685 + Sama_0772 0.21 +0.7
955,685 + Sama_0772 0.21 -1.0
955,685 + Sama_0772 0.21 -1.7
955,737 + Sama_0772 0.26 +0.7
955,784 + Sama_0772 0.31 -0.4
955,813 + Sama_0772 0.34 -0.1
955,814 - Sama_0772 0.34 -1.1
955,814 - Sama_0772 0.34 -1.2
955,891 - Sama_0772 0.42 -0.2
956,067 + Sama_0772 0.61 +2.2
956,068 - Sama_0772 0.61 -0.6
956,083 + Sama_0772 0.62 +0.3
956,084 - Sama_0772 0.62 -0.2
956,116 - Sama_0772 0.66 -0.0
956,261 + Sama_0772 0.81 +1.0
956,262 - Sama_0772 0.81 -0.9
956,262 - Sama_0772 0.81 -2.0
956,343 - Sama_0772 0.89 +0.1
956,343 - Sama_0772 0.89 +0.7
956,364 + +0.6
956,365 - +0.3
956,459 + +0.3
956,460 - +0.4
956,460 - +0.5
956,460 - +0.9
956,513 - -0.0
956,558 + Sama_0773 0.14 -1.1
956,559 - Sama_0773 0.15 +0.8
956,559 - Sama_0773 0.15 -0.6
956,614 + Sama_0773 0.22 -0.0
956,614 + Sama_0773 0.22 +0.3
956,615 - Sama_0773 0.22 +0.3
956,618 + Sama_0773 0.22 -0.6
956,618 + Sama_0773 0.22 -0.1
956,618 + Sama_0773 0.22 -0.9
956,618 + Sama_0773 0.22 -0.4
956,618 + Sama_0773 0.22 -0.5
956,618 + Sama_0773 0.22 -0.5
956,618 + Sama_0773 0.22 +0.9
956,619 - Sama_0773 0.22 +0.9
956,619 - Sama_0773 0.22 -0.7
956,619 - Sama_0773 0.22 -0.2
956,629 + Sama_0773 0.24 +0.8
956,630 - Sama_0773 0.24 +0.3
956,672 + Sama_0773 0.29 +0.2
956,731 + Sama_0773 0.37 +1.3
956,732 - Sama_0773 0.37 +0.2
956,732 - Sama_0773 0.37 +2.3
956,753 + Sama_0773 0.40 -0.2
956,753 + Sama_0773 0.40 -0.4
956,753 + Sama_0773 0.40 -1.2
956,754 - Sama_0773 0.40 -0.3
956,772 - Sama_0773 0.42 -0.5
956,815 - Sama_0773 0.48 +1.2
956,920 + Sama_0773 0.61 -0.3
956,963 - Sama_0773 0.67 +0.2
956,993 + Sama_0773 0.71 +0.7
956,993 + Sama_0773 0.71 -0.1
956,993 + Sama_0773 0.71 +0.9
956,994 - Sama_0773 0.71 +0.8
956,994 - Sama_0773 0.71 -0.0
957,007 - Sama_0773 0.73 -1.1
957,011 + Sama_0773 0.73 +1.0
957,011 + Sama_0773 0.73 +1.0
957,011 + Sama_0773 0.73 +0.4
957,011 + Sama_0773 0.73 -1.0
957,011 + Sama_0773 0.73 +0.3
957,057 + Sama_0773 0.79 -1.1
957,057 + Sama_0773 0.79 +0.1
957,071 + Sama_0773 0.81 +0.2
957,072 - Sama_0773 0.81 +0.2
957,078 + Sama_0773 0.82 -0.2
957,078 + Sama_0773 0.82 +1.3
957,078 + Sama_0773 0.82 -0.1
957,078 + Sama_0773 0.82 +1.5
957,079 - Sama_0773 0.82 +0.1
957,079 - Sama_0773 0.82 -0.8
957,079 - Sama_0773 0.82 +0.1
957,179 + +3.8
957,179 + +0.4
957,179 + +0.3
957,179 + +0.8
957,182 + -0.4
957,230 + -1.8
957,249 + -0.7
957,249 + -0.5
957,266 + -0.1
957,267 - -2.4
957,379 + Sama_0774 0.23 +0.4
957,379 + Sama_0774 0.23 -0.5
957,383 + Sama_0774 0.24 +1.3
957,463 + Sama_0774 0.40 +0.3
957,463 + Sama_0774 0.40 +0.6
957,463 + Sama_0774 0.40 +0.5
957,463 + Sama_0774 0.40 +1.3
957,463 + Sama_0774 0.40 +0.9
957,463 + Sama_0774 0.40 +0.3
957,463 + Sama_0774 0.40 -0.2
957,463 + Sama_0774 0.40 +0.6
957,463 + Sama_0774 0.40 +0.3
957,463 + Sama_0774 0.40 +0.2
957,463 + Sama_0774 0.40 +0.0
957,464 - Sama_0774 0.40 -2.1
957,464 - Sama_0774 0.40 +1.9
957,464 - Sama_0774 0.40 -0.1
957,464 - Sama_0774 0.40 +1.0
957,464 - Sama_0774 0.40 +1.3
957,464 - Sama_0774 0.40 -0.3
957,464 - Sama_0774 0.40 +0.2
957,464 - Sama_0774 0.40 -0.2
957,464 - Sama_0774 0.40 +0.5
957,464 - Sama_0774 0.40 +0.9
957,464 - Sama_0774 0.40 -0.3
957,464 - Sama_0774 0.40 +0.0
957,467 + Sama_0774 0.40 +0.0
957,467 + Sama_0774 0.40 +0.7
957,467 + Sama_0774 0.40 -0.8
957,468 - Sama_0774 0.41 -0.3
957,468 - Sama_0774 0.41 +0.1
957,668 + Sama_0774 0.80 +0.1
957,668 + Sama_0774 0.80 +0.2
957,669 - Sama_0774 0.81 +0.3
957,669 - Sama_0774 0.81 +0.9
957,696 + Sama_0774 0.86 +1.7
957,696 + Sama_0774 0.86 +1.7
957,697 - Sama_0774 0.86 +0.8
957,698 + Sama_0774 0.86 +0.4
957,699 - Sama_0774 0.87 +1.0
957,699 - Sama_0774 0.87 +0.2
957,699 - Sama_0774 0.87 +0.3
957,699 - Sama_0774 0.87 +0.8
957,739 + -0.1
957,739 + -0.3
957,739 + -0.3
957,739 + +0.3
957,739 + +1.3
957,739 + +0.7
957,739 + -0.4
957,740 - +0.3
957,740 - -0.7
957,740 - -1.7
957,740 - -0.6
957,740 - +0.2
957,801 - -0.4
957,878 + +0.3
957,878 + +0.6
957,879 - -0.1
957,882 + -0.0
957,882 + -1.0
957,882 + +0.6
957,942 + -0.9
957,942 + +0.3
957,942 + +0.1
957,942 + +1.8
957,942 + -0.1
957,942 + -0.8
957,942 + +0.3
957,942 + +0.1
957,942 + +0.1
957,942 + -0.2
957,943 - -0.6
957,943 - +0.3
957,943 - -0.0
957,943 - +0.3
957,943 - +1.0
957,943 - +0.3
957,943 - -0.5
957,943 - -0.4
957,943 - +0.3
957,943 - +0.0
957,959 - +0.3
957,959 - -0.1
957,977 + +1.7
957,978 - -0.3

Or see this region's nucleotide sequence