Strain Fitness in Shewanella amazonensis SB2B around Sama_0584

Experiment: 5-Hydroxymethylfurfural 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0583 and Sama_0584 are separated by 278 nucleotidesSama_0584 and Sama_0585 are separated by 133 nucleotides Sama_0583: Sama_0583 - diguanylate cyclase (RefSeq), at 727,391 to 728,977 _0583 Sama_0584: Sama_0584 - elongation factor G (RefSeq), at 729,256 to 731,346 _0584 Sama_0585: Sama_0585 - hypothetical protein (RefSeq), at 731,480 to 732,361 _0585 Sama_0586: Sama_0586 - LysR family transcriptional regulator (RefSeq), at 732,315 to 733,223 _0586 Position (kb) 729 730 731 732Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 728.260 kb on - strand, within Sama_0583at 728.260 kb on - strand, within Sama_0583at 728.417 kb on + strand, within Sama_0583at 728.417 kb on + strand, within Sama_0583at 728.417 kb on + strand, within Sama_0583at 728.417 kb on + strand, within Sama_0583at 728.417 kb on + strand, within Sama_0583at 728.417 kb on + strand, within Sama_0583at 728.417 kb on + strand, within Sama_0583at 728.417 kb on + strand, within Sama_0583at 728.417 kb on + strand, within Sama_0583at 728.417 kb on + strand, within Sama_0583at 728.417 kb on + strand, within Sama_0583at 728.417 kb on + strand, within Sama_0583at 728.418 kb on - strand, within Sama_0583at 728.418 kb on - strand, within Sama_0583at 728.418 kb on - strand, within Sama_0583at 728.418 kb on - strand, within Sama_0583at 728.418 kb on - strand, within Sama_0583at 728.418 kb on - strand, within Sama_0583at 728.418 kb on - strand, within Sama_0583at 728.418 kb on - strand, within Sama_0583at 728.438 kb on + strand, within Sama_0583at 728.438 kb on + strand, within Sama_0583at 728.438 kb on + strand, within Sama_0583at 728.439 kb on - strand, within Sama_0583at 728.439 kb on - strand, within Sama_0583at 728.439 kb on - strand, within Sama_0583at 728.439 kb on - strand, within Sama_0583at 728.439 kb on - strand, within Sama_0583at 728.439 kb on - strand, within Sama_0583at 728.439 kb on - strand, within Sama_0583at 728.439 kb on - strand, within Sama_0583at 728.439 kb on - strand, within Sama_0583at 728.439 kb on - strand, within Sama_0583at 728.439 kb on - strand, within Sama_0583at 728.439 kb on - strand, within Sama_0583at 728.491 kb on + strand, within Sama_0583at 728.492 kb on - strand, within Sama_0583at 728.492 kb on - strand, within Sama_0583at 728.492 kb on - strand, within Sama_0583at 728.527 kb on + strand, within Sama_0583at 728.527 kb on + strand, within Sama_0583at 728.527 kb on + strand, within Sama_0583at 728.527 kb on + strand, within Sama_0583at 728.527 kb on + strand, within Sama_0583at 728.527 kb on + strand, within Sama_0583at 728.527 kb on + strand, within Sama_0583at 728.528 kb on - strand, within Sama_0583at 728.528 kb on - strand, within Sama_0583at 728.528 kb on - strand, within Sama_0583at 728.528 kb on - strand, within Sama_0583at 728.608 kb on + strand, within Sama_0583at 728.608 kb on + strand, within Sama_0583at 728.608 kb on + strand, within Sama_0583at 728.608 kb on + strand, within Sama_0583at 728.608 kb on + strand, within Sama_0583at 728.608 kb on + strand, within Sama_0583at 728.608 kb on + strand, within Sama_0583at 728.609 kb on - strand, within Sama_0583at 728.609 kb on - strand, within Sama_0583at 728.611 kb on - strand, within Sama_0583at 728.612 kb on + strand, within Sama_0583at 728.612 kb on + strand, within Sama_0583at 728.612 kb on + strand, within Sama_0583at 728.612 kb on + strand, within Sama_0583at 728.613 kb on - strand, within Sama_0583at 728.613 kb on - strand, within Sama_0583at 728.613 kb on - strand, within Sama_0583at 728.613 kb on - strand, within Sama_0583at 728.613 kb on - strand, within Sama_0583at 728.613 kb on - strand, within Sama_0583at 728.613 kb on - strand, within Sama_0583at 728.744 kb on + strand, within Sama_0583at 728.744 kb on + strand, within Sama_0583at 728.744 kb on + strand, within Sama_0583at 728.745 kb on - strand, within Sama_0583at 728.745 kb on - strand, within Sama_0583at 728.760 kb on + strand, within Sama_0583at 728.761 kb on - strand, within Sama_0583at 728.761 kb on - strand, within Sama_0583at 728.775 kb on + strand, within Sama_0583at 728.775 kb on + strand, within Sama_0583at 728.775 kb on + strand, within Sama_0583at 728.799 kb on + strand, within Sama_0583at 728.800 kb on - strand, within Sama_0583at 728.803 kb on + strand, within Sama_0583at 728.803 kb on + strand, within Sama_0583at 728.803 kb on + strand, within Sama_0583at 728.804 kb on - strand, within Sama_0583at 728.804 kb on - strand, within Sama_0583at 728.804 kb on - strand, within Sama_0583at 728.804 kb on - strand, within Sama_0583at 728.804 kb on - strand, within Sama_0583at 728.856 kb on - strandat 728.856 kb on - strandat 728.856 kb on - strandat 728.912 kb on + strandat 728.912 kb on + strandat 728.912 kb on + strandat 728.912 kb on + strandat 728.912 kb on + strandat 728.912 kb on + strandat 728.912 kb on + strandat 728.912 kb on + strandat 728.913 kb on - strandat 728.913 kb on - strandat 728.913 kb on - strandat 728.913 kb on - strandat 728.913 kb on - strandat 728.913 kb on - strandat 728.913 kb on - strandat 728.913 kb on - strandat 728.913 kb on - strandat 728.913 kb on - strandat 729.007 kb on + strandat 729.007 kb on + strandat 729.007 kb on + strandat 729.008 kb on - strandat 729.008 kb on - strandat 729.008 kb on - strandat 729.008 kb on - strandat 729.054 kb on - strandat 729.095 kb on + strandat 729.103 kb on + strandat 729.103 kb on + strandat 729.104 kb on - strandat 729.104 kb on - strandat 729.133 kb on + strandat 729.133 kb on + strandat 729.134 kb on - strandat 729.134 kb on - strandat 729.170 kb on - strandat 731.306 kb on + strandat 731.307 kb on - strandat 731.344 kb on + strandat 731.348 kb on + strandat 731.348 kb on + strandat 731.348 kb on + strandat 731.400 kb on + strandat 731.400 kb on + strandat 731.401 kb on - strandat 731.401 kb on - strandat 731.439 kb on - strandat 731.460 kb on - strandat 731.463 kb on + strandat 731.464 kb on - strandat 731.485 kb on + strandat 731.485 kb on + strandat 731.485 kb on + strandat 731.485 kb on + strandat 731.486 kb on - strandat 731.486 kb on - strandat 731.486 kb on - strandat 731.486 kb on - strandat 731.569 kb on + strand, within Sama_0585at 731.569 kb on + strand, within Sama_0585at 731.569 kb on + strand, within Sama_0585at 731.570 kb on - strand, within Sama_0585at 731.570 kb on - strand, within Sama_0585at 731.570 kb on - strand, within Sama_0585at 731.570 kb on - strand, within Sama_0585at 731.582 kb on + strand, within Sama_0585at 731.582 kb on + strand, within Sama_0585at 731.582 kb on + strand, within Sama_0585at 731.583 kb on - strand, within Sama_0585at 731.583 kb on - strand, within Sama_0585at 731.601 kb on - strand, within Sama_0585at 731.601 kb on - strand, within Sama_0585at 731.619 kb on - strand, within Sama_0585at 731.619 kb on - strand, within Sama_0585at 731.619 kb on - strand, within Sama_0585at 731.621 kb on + strand, within Sama_0585at 731.621 kb on + strand, within Sama_0585at 731.621 kb on + strand, within Sama_0585at 731.621 kb on + strand, within Sama_0585at 731.622 kb on - strand, within Sama_0585at 731.622 kb on - strand, within Sama_0585at 731.622 kb on - strand, within Sama_0585at 731.622 kb on - strand, within Sama_0585at 731.622 kb on - strand, within Sama_0585at 731.622 kb on - strand, within Sama_0585at 731.622 kb on - strand, within Sama_0585at 731.622 kb on - strand, within Sama_0585at 731.623 kb on + strand, within Sama_0585at 731.623 kb on + strand, within Sama_0585at 731.623 kb on + strand, within Sama_0585at 731.623 kb on + strand, within Sama_0585at 731.623 kb on + strand, within Sama_0585at 731.623 kb on + strand, within Sama_0585at 731.624 kb on - strand, within Sama_0585at 731.624 kb on - strand, within Sama_0585at 731.624 kb on - strand, within Sama_0585at 731.624 kb on - strand, within Sama_0585at 731.624 kb on - strand, within Sama_0585at 731.624 kb on - strand, within Sama_0585at 731.658 kb on + strand, within Sama_0585at 731.659 kb on - strand, within Sama_0585at 731.723 kb on + strand, within Sama_0585at 731.723 kb on + strand, within Sama_0585at 731.724 kb on - strand, within Sama_0585at 731.724 kb on - strand, within Sama_0585at 731.733 kb on + strand, within Sama_0585at 731.733 kb on + strand, within Sama_0585at 731.734 kb on - strand, within Sama_0585at 731.800 kb on - strand, within Sama_0585at 731.800 kb on - strand, within Sama_0585at 731.848 kb on + strand, within Sama_0585at 731.848 kb on + strand, within Sama_0585at 731.849 kb on - strand, within Sama_0585at 731.913 kb on + strand, within Sama_0585at 731.914 kb on - strand, within Sama_0585at 731.925 kb on + strand, within Sama_0585at 731.926 kb on - strand, within Sama_0585at 731.926 kb on - strand, within Sama_0585at 732.001 kb on + strand, within Sama_0585at 732.001 kb on + strand, within Sama_0585at 732.007 kb on + strand, within Sama_0585at 732.008 kb on - strand, within Sama_0585at 732.008 kb on - strand, within Sama_0585at 732.008 kb on - strand, within Sama_0585at 732.018 kb on + strand, within Sama_0585at 732.019 kb on - strand, within Sama_0585at 732.073 kb on + strand, within Sama_0585at 732.073 kb on + strand, within Sama_0585at 732.073 kb on + strand, within Sama_0585at 732.074 kb on - strand, within Sama_0585at 732.074 kb on - strand, within Sama_0585at 732.074 kb on - strand, within Sama_0585at 732.074 kb on - strand, within Sama_0585at 732.074 kb on - strand, within Sama_0585at 732.074 kb on - strand, within Sama_0585at 732.074 kb on - strand, within Sama_0585at 732.091 kb on + strand, within Sama_0585at 732.189 kb on - strand, within Sama_0585at 732.207 kb on + strand, within Sama_0585at 732.218 kb on + strand, within Sama_0585at 732.218 kb on + strand, within Sama_0585at 732.219 kb on - strand, within Sama_0585at 732.219 kb on - strand, within Sama_0585at 732.219 kb on - strand, within Sama_0585at 732.219 kb on - strand, within Sama_0585at 732.219 kb on - strand, within Sama_0585at 732.219 kb on - strand, within Sama_0585at 732.219 kb on - strand, within Sama_0585at 732.219 kb on - strand, within Sama_0585at 732.250 kb on + strand, within Sama_0585at 732.251 kb on - strand, within Sama_0585at 732.251 kb on - strand, within Sama_0585at 732.252 kb on + strand, within Sama_0585at 732.252 kb on + strand, within Sama_0585at 732.252 kb on + strand, within Sama_0585at 732.253 kb on - strand, within Sama_0585at 732.253 kb on - strand, within Sama_0585at 732.253 kb on - strand, within Sama_0585at 732.253 kb on - strand, within Sama_0585at 732.307 kb on + strandat 732.308 kb on - strandat 732.317 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM
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728,260 - Sama_0583 0.55 +0.8
728,260 - Sama_0583 0.55 +1.2
728,417 + Sama_0583 0.65 +1.1
728,417 + Sama_0583 0.65 -0.1
728,417 + Sama_0583 0.65 +0.7
728,417 + Sama_0583 0.65 +0.6
728,417 + Sama_0583 0.65 +0.4
728,417 + Sama_0583 0.65 +1.5
728,417 + Sama_0583 0.65 -0.1
728,417 + Sama_0583 0.65 -0.4
728,417 + Sama_0583 0.65 +0.6
728,417 + Sama_0583 0.65 +0.8
728,417 + Sama_0583 0.65 +0.4
728,417 + Sama_0583 0.65 +0.3
728,418 - Sama_0583 0.65 -0.3
728,418 - Sama_0583 0.65 +0.3
728,418 - Sama_0583 0.65 -0.0
728,418 - Sama_0583 0.65 -0.4
728,418 - Sama_0583 0.65 +0.9
728,418 - Sama_0583 0.65 +0.4
728,418 - Sama_0583 0.65 -0.4
728,418 - Sama_0583 0.65 -0.4
728,438 + Sama_0583 0.66 -0.7
728,438 + Sama_0583 0.66 +0.6
728,438 + Sama_0583 0.66 -1.6
728,439 - Sama_0583 0.66 +0.4
728,439 - Sama_0583 0.66 +0.8
728,439 - Sama_0583 0.66 +0.1
728,439 - Sama_0583 0.66 +1.0
728,439 - Sama_0583 0.66 -0.3
728,439 - Sama_0583 0.66 +0.2
728,439 - Sama_0583 0.66 +1.0
728,439 - Sama_0583 0.66 +0.8
728,439 - Sama_0583 0.66 +0.1
728,439 - Sama_0583 0.66 +0.3
728,439 - Sama_0583 0.66 +1.3
728,439 - Sama_0583 0.66 -0.8
728,491 + Sama_0583 0.69 +0.7
728,492 - Sama_0583 0.69 +1.2
728,492 - Sama_0583 0.69 +0.0
728,492 - Sama_0583 0.69 +0.2
728,527 + Sama_0583 0.72 +0.6
728,527 + Sama_0583 0.72 -0.7
728,527 + Sama_0583 0.72 +0.8
728,527 + Sama_0583 0.72 +0.2
728,527 + Sama_0583 0.72 -0.1
728,527 + Sama_0583 0.72 +0.4
728,527 + Sama_0583 0.72 +0.4
728,528 - Sama_0583 0.72 +0.0
728,528 - Sama_0583 0.72 -0.6
728,528 - Sama_0583 0.72 -0.2
728,528 - Sama_0583 0.72 +0.0
728,608 + Sama_0583 0.77 +1.4
728,608 + Sama_0583 0.77 -0.3
728,608 + Sama_0583 0.77 +0.5
728,608 + Sama_0583 0.77 +0.1
728,608 + Sama_0583 0.77 +1.2
728,608 + Sama_0583 0.77 -0.5
728,608 + Sama_0583 0.77 +0.2
728,609 - Sama_0583 0.77 +0.4
728,609 - Sama_0583 0.77 +0.5
728,611 - Sama_0583 0.77 +0.6
728,612 + Sama_0583 0.77 +0.1
728,612 + Sama_0583 0.77 +0.2
728,612 + Sama_0583 0.77 +0.2
728,612 + Sama_0583 0.77 +0.6
728,613 - Sama_0583 0.77 +0.1
728,613 - Sama_0583 0.77 -0.3
728,613 - Sama_0583 0.77 -0.2
728,613 - Sama_0583 0.77 +0.7
728,613 - Sama_0583 0.77 +0.0
728,613 - Sama_0583 0.77 -0.6
728,613 - Sama_0583 0.77 +0.1
728,744 + Sama_0583 0.85 +1.4
728,744 + Sama_0583 0.85 -1.3
728,744 + Sama_0583 0.85 -0.3
728,745 - Sama_0583 0.85 +0.4
728,745 - Sama_0583 0.85 +0.6
728,760 + Sama_0583 0.86 +0.9
728,761 - Sama_0583 0.86 -0.3
728,761 - Sama_0583 0.86 -0.1
728,775 + Sama_0583 0.87 +0.6
728,775 + Sama_0583 0.87 -0.4
728,775 + Sama_0583 0.87 +0.4
728,799 + Sama_0583 0.89 -0.1
728,800 - Sama_0583 0.89 +0.0
728,803 + Sama_0583 0.89 +1.2
728,803 + Sama_0583 0.89 +0.0
728,803 + Sama_0583 0.89 -0.6
728,804 - Sama_0583 0.89 -0.4
728,804 - Sama_0583 0.89 +0.4
728,804 - Sama_0583 0.89 +0.6
728,804 - Sama_0583 0.89 -0.8
728,804 - Sama_0583 0.89 +1.0
728,856 - +0.2
728,856 - +0.3
728,856 - -0.4
728,912 + -1.2
728,912 + -1.4
728,912 + +2.0
728,912 + -0.9
728,912 + -0.0
728,912 + +0.2
728,912 + -0.8
728,912 + -1.0
728,913 - +0.6
728,913 - +0.4
728,913 - -0.4
728,913 - -0.1
728,913 - -0.3
728,913 - +0.4
728,913 - +1.1
728,913 - +0.4
728,913 - +0.4
728,913 - +0.3
729,007 + -0.6
729,007 + +0.9
729,007 + +0.2
729,008 - -1.0
729,008 - -0.8
729,008 - -0.2
729,008 - +0.3
729,054 - +1.0
729,095 + +0.3
729,103 + +0.3
729,103 + -0.1
729,104 - +1.0
729,104 - +0.9
729,133 + -1.7
729,133 + +0.4
729,134 - +0.7
729,134 - +1.3
729,170 - -1.9
731,306 + +2.0
731,307 - -1.0
731,344 + -2.6
731,348 + -1.1
731,348 + +1.2
731,348 + -3.2
731,400 + +0.4
731,400 + -0.4
731,401 - -1.2
731,401 - -1.3
731,439 - +0.1
731,460 - -0.4
731,463 + -0.7
731,464 - -0.1
731,485 + +0.0
731,485 + +0.3
731,485 + -1.6
731,485 + -0.1
731,486 - -0.6
731,486 - +0.7
731,486 - -0.2
731,486 - +0.2
731,569 + Sama_0585 0.10 +1.2
731,569 + Sama_0585 0.10 +0.1
731,569 + Sama_0585 0.10 +1.1
731,570 - Sama_0585 0.10 +0.6
731,570 - Sama_0585 0.10 -0.2
731,570 - Sama_0585 0.10 -0.4
731,570 - Sama_0585 0.10 -0.5
731,582 + Sama_0585 0.12 +1.0
731,582 + Sama_0585 0.12 +0.2
731,582 + Sama_0585 0.12 +0.7
731,583 - Sama_0585 0.12 -0.7
731,583 - Sama_0585 0.12 -0.6
731,601 - Sama_0585 0.14 +3.0
731,601 - Sama_0585 0.14 -0.3
731,619 - Sama_0585 0.16 -0.4
731,619 - Sama_0585 0.16 -0.6
731,619 - Sama_0585 0.16 -0.6
731,621 + Sama_0585 0.16 +0.3
731,621 + Sama_0585 0.16 -0.0
731,621 + Sama_0585 0.16 +0.4
731,621 + Sama_0585 0.16 +1.4
731,622 - Sama_0585 0.16 +0.7
731,622 - Sama_0585 0.16 +0.0
731,622 - Sama_0585 0.16 +1.4
731,622 - Sama_0585 0.16 +1.6
731,622 - Sama_0585 0.16 -1.5
731,622 - Sama_0585 0.16 +1.1
731,622 - Sama_0585 0.16 -0.9
731,622 - Sama_0585 0.16 +0.4
731,623 + Sama_0585 0.16 +1.2
731,623 + Sama_0585 0.16 -0.6
731,623 + Sama_0585 0.16 -1.0
731,623 + Sama_0585 0.16 -0.3
731,623 + Sama_0585 0.16 +0.1
731,623 + Sama_0585 0.16 -0.6
731,624 - Sama_0585 0.16 -0.9
731,624 - Sama_0585 0.16 +0.4
731,624 - Sama_0585 0.16 -0.1
731,624 - Sama_0585 0.16 +0.9
731,624 - Sama_0585 0.16 -1.2
731,624 - Sama_0585 0.16 -0.5
731,658 + Sama_0585 0.20 -0.4
731,659 - Sama_0585 0.20 -0.3
731,723 + Sama_0585 0.28 +0.7
731,723 + Sama_0585 0.28 +0.0
731,724 - Sama_0585 0.28 +0.3
731,724 - Sama_0585 0.28 +0.7
731,733 + Sama_0585 0.29 -1.2
731,733 + Sama_0585 0.29 +0.6
731,734 - Sama_0585 0.29 +0.7
731,800 - Sama_0585 0.36 -0.1
731,800 - Sama_0585 0.36 +0.5
731,848 + Sama_0585 0.42 -0.9
731,848 + Sama_0585 0.42 -1.0
731,849 - Sama_0585 0.42 +0.6
731,913 + Sama_0585 0.49 +0.9
731,914 - Sama_0585 0.49 +1.6
731,925 + Sama_0585 0.50 -1.2
731,926 - Sama_0585 0.51 +0.2
731,926 - Sama_0585 0.51 +0.5
732,001 + Sama_0585 0.59 -1.4
732,001 + Sama_0585 0.59 -0.1
732,007 + Sama_0585 0.60 -0.4
732,008 - Sama_0585 0.60 +0.3
732,008 - Sama_0585 0.60 +0.0
732,008 - Sama_0585 0.60 +1.1
732,018 + Sama_0585 0.61 +0.9
732,019 - Sama_0585 0.61 +0.4
732,073 + Sama_0585 0.67 -0.2
732,073 + Sama_0585 0.67 -1.3
732,073 + Sama_0585 0.67 -0.9
732,074 - Sama_0585 0.67 -0.7
732,074 - Sama_0585 0.67 +0.4
732,074 - Sama_0585 0.67 -0.9
732,074 - Sama_0585 0.67 +0.6
732,074 - Sama_0585 0.67 +2.0
732,074 - Sama_0585 0.67 +1.7
732,074 - Sama_0585 0.67 +0.2
732,091 + Sama_0585 0.69 -0.8
732,189 - Sama_0585 0.80 +1.1
732,207 + Sama_0585 0.82 +0.3
732,218 + Sama_0585 0.84 +0.3
732,218 + Sama_0585 0.84 -0.5
732,219 - Sama_0585 0.84 -0.7
732,219 - Sama_0585 0.84 +0.4
732,219 - Sama_0585 0.84 -0.3
732,219 - Sama_0585 0.84 +0.0
732,219 - Sama_0585 0.84 -1.2
732,219 - Sama_0585 0.84 -1.6
732,219 - Sama_0585 0.84 -0.5
732,219 - Sama_0585 0.84 +2.2
732,250 + Sama_0585 0.87 +0.1
732,251 - Sama_0585 0.87 -0.1
732,251 - Sama_0585 0.87 +0.2
732,252 + Sama_0585 0.88 +1.3
732,252 + Sama_0585 0.88 -0.6
732,252 + Sama_0585 0.88 +0.4
732,253 - Sama_0585 0.88 +0.7
732,253 - Sama_0585 0.88 -0.4
732,253 - Sama_0585 0.88 +0.4
732,253 - Sama_0585 0.88 +0.8
732,307 + +0.1
732,308 - +0.2
732,317 - -1.4

Or see this region's nucleotide sequence