Experiment: 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0323 and slmA are separated by 116 nucleotides slmA and dut are separated by 28 nucleotides dut and Sama_0326 overlap by 4 nucleotides
Sama_0323: Sama_0323 - prolyl oligopeptidase family protein (RefSeq), at 389,988 to 391,937
_0323
Sama_0324: slmA - nucleoid occlusion protein (RefSeq), at 392,054 to 392,647
slmA
Sama_0325: dut - deoxyuridine 5'-triphosphate nucleotidohydrolase (RefSeq), at 392,676 to 393,134
dut
Sama_0326: Sama_0326 - phosphopantothenoylcysteine decarboxylase., phosphopantothenate--cysteine ligase (RefSeq), at 393,131 to 394,384
_0326
Position (kb) 392
393
394 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 391.694 kb on - strand, within Sama_0323 at 391.793 kb on + strand at 391.802 kb on + strand at 391.803 kb on - strand at 391.807 kb on + strand at 391.807 kb on + strand at 391.807 kb on + strand at 391.807 kb on + strand at 391.808 kb on - strand at 391.808 kb on - strand at 391.808 kb on - strand at 391.808 kb on - strand at 391.830 kb on + strand at 391.830 kb on + strand at 391.830 kb on + strand at 391.830 kb on + strand at 391.831 kb on - strand at 391.831 kb on - strand at 391.831 kb on - strand at 391.831 kb on - strand at 391.831 kb on - strand at 391.929 kb on + strand at 391.929 kb on + strand at 391.930 kb on - strand at 391.930 kb on - strand at 391.930 kb on - strand at 391.930 kb on - strand at 391.961 kb on + strand at 391.962 kb on - strand at 391.962 kb on - strand at 391.969 kb on + strand at 392.009 kb on - strand at 392.026 kb on + strand at 392.026 kb on + strand at 392.026 kb on + strand at 392.035 kb on + strand at 392.036 kb on - strand at 392.045 kb on + strand at 392.055 kb on + strand at 392.055 kb on + strand at 392.055 kb on + strand at 392.056 kb on - strand at 392.056 kb on - strand at 392.056 kb on - strand at 392.056 kb on - strand at 392.056 kb on - strand at 392.056 kb on - strand at 392.064 kb on - strand at 392.064 kb on - strand at 392.066 kb on + strand at 392.066 kb on + strand at 392.067 kb on - strand at 392.067 kb on - strand at 392.080 kb on + strand at 392.080 kb on + strand at 392.081 kb on - strand at 392.139 kb on + strand, within slmA at 392.147 kb on + strand, within slmA at 392.148 kb on - strand, within slmA at 392.353 kb on + strand, within slmA at 392.353 kb on + strand, within slmA at 392.385 kb on - strand, within slmA at 392.385 kb on - strand, within slmA at 392.385 kb on - strand, within slmA at 392.385 kb on - strand, within slmA at 392.385 kb on - strand, within slmA at 392.438 kb on - strand, within slmA at 392.438 kb on - strand, within slmA at 392.438 kb on - strand, within slmA at 392.438 kb on - strand, within slmA at 392.462 kb on - strand, within slmA at 392.462 kb on - strand, within slmA at 392.511 kb on + strand, within slmA at 392.534 kb on + strand, within slmA at 392.534 kb on + strand, within slmA at 392.535 kb on - strand, within slmA at 392.535 kb on - strand, within slmA at 392.560 kb on + strand, within slmA at 392.560 kb on + strand, within slmA at 392.560 kb on + strand, within slmA at 392.560 kb on + strand, within slmA at 392.560 kb on + strand, within slmA at 392.561 kb on - strand, within slmA at 392.563 kb on + strand, within slmA at 392.563 kb on + strand, within slmA at 392.563 kb on + strand, within slmA at 392.563 kb on + strand, within slmA at 392.563 kb on + strand, within slmA at 392.563 kb on + strand, within slmA at 392.563 kb on + strand, within slmA at 392.563 kb on + strand, within slmA at 392.563 kb on + strand, within slmA at 392.563 kb on + strand, within slmA at 392.563 kb on + strand, within slmA at 392.563 kb on + strand, within slmA at 392.563 kb on + strand, within slmA at 392.563 kb on + strand, within slmA at 392.563 kb on + strand, within slmA at 392.563 kb on + strand, within slmA at 392.564 kb on - strand, within slmA at 392.564 kb on - strand, within slmA at 392.564 kb on - strand, within slmA at 392.564 kb on - strand, within slmA at 392.564 kb on - strand, within slmA at 392.564 kb on - strand, within slmA at 392.564 kb on - strand, within slmA at 392.564 kb on - strand, within slmA at 392.564 kb on - strand, within slmA at 392.564 kb on - strand, within slmA at 392.564 kb on - strand, within slmA at 392.564 kb on - strand, within slmA at 392.564 kb on - strand, within slmA at 392.564 kb on - strand, within slmA at 392.611 kb on + strand at 392.611 kb on + strand at 392.612 kb on - strand at 392.612 kb on - strand at 392.612 kb on - strand at 392.612 kb on - strand at 392.664 kb on + strand at 392.664 kb on + strand at 392.664 kb on + strand at 392.664 kb on + strand at 392.665 kb on - strand at 392.665 kb on - strand at 392.665 kb on - strand at 392.809 kb on + strand, within dut at 392.810 kb on - strand, within dut at 392.810 kb on - strand, within dut at 392.810 kb on - strand, within dut at 392.857 kb on + strand, within dut at 392.858 kb on - strand, within dut at 392.892 kb on + strand, within dut at 392.892 kb on + strand, within dut at 392.892 kb on + strand, within dut at 392.893 kb on - strand, within dut at 392.893 kb on - strand, within dut at 392.895 kb on + strand, within dut at 392.895 kb on + strand, within dut at 392.895 kb on + strand, within dut at 392.895 kb on + strand, within dut at 392.895 kb on + strand, within dut at 392.895 kb on + strand, within dut at 392.895 kb on + strand, within dut at 392.895 kb on + strand, within dut at 392.895 kb on + strand, within dut at 392.896 kb on - strand, within dut at 392.896 kb on - strand, within dut at 392.896 kb on - strand, within dut at 392.896 kb on - strand, within dut at 392.896 kb on - strand, within dut at 392.896 kb on - strand, within dut at 392.906 kb on + strand, within dut at 392.906 kb on + strand, within dut at 392.907 kb on - strand, within dut at 392.978 kb on + strand, within dut at 392.979 kb on - strand, within dut at 392.982 kb on + strand, within dut at 392.982 kb on + strand, within dut at 392.982 kb on + strand, within dut at 392.982 kb on + strand, within dut at 392.982 kb on + strand, within dut at 392.982 kb on + strand, within dut at 392.983 kb on - strand, within dut at 392.983 kb on - strand, within dut at 392.983 kb on - strand, within dut at 392.983 kb on - strand, within dut at 392.983 kb on - strand, within dut at 393.006 kb on + strand, within dut at 393.006 kb on + strand, within dut at 393.007 kb on - strand, within dut at 393.007 kb on - strand, within dut at 393.035 kb on + strand, within dut at 393.035 kb on + strand, within dut at 393.035 kb on + strand, within dut at 393.036 kb on - strand, within dut at 393.036 kb on - strand, within dut at 393.036 kb on - strand, within dut at 393.067 kb on + strand, within dut at 393.094 kb on - strand at 393.094 kb on - strand at 393.156 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM remove 391,694 - Sama_0323 0.87 -0.4 391,793 + -0.5 391,802 + +1.6 391,803 - +0.1 391,807 + +0.2 391,807 + -1.6 391,807 + -0.6 391,807 + +0.1 391,808 - -0.1 391,808 - +0.2 391,808 - -1.1 391,808 - -1.3 391,830 + -0.7 391,830 + -0.3 391,830 + -0.1 391,830 + +0.4 391,831 - -2.3 391,831 - +0.3 391,831 - +0.0 391,831 - -0.6 391,831 - +0.9 391,929 + -2.4 391,929 + -1.2 391,930 - -0.0 391,930 - +0.2 391,930 - +0.3 391,930 - -0.3 391,961 + +0.9 391,962 - -1.2 391,962 - +1.3 391,969 + -0.8 392,009 - +0.8 392,026 + -0.2 392,026 + -0.3 392,026 + +1.1 392,035 + +0.8 392,036 - +0.2 392,045 + -0.5 392,055 + -1.9 392,055 + -0.1 392,055 + -0.1 392,056 - -0.5 392,056 - -0.1 392,056 - +0.2 392,056 - +0.2 392,056 - -0.0 392,056 - +1.3 392,064 - -0.5 392,064 - -0.9 392,066 + -1.3 392,066 + +0.1 392,067 - -1.3 392,067 - -0.4 392,080 + -2.2 392,080 + -1.0 392,081 - -0.3 392,139 + slmA Sama_0324 0.14 -4.5 392,147 + slmA Sama_0324 0.16 -1.1 392,148 - slmA Sama_0324 0.16 -0.3 392,353 + slmA Sama_0324 0.50 -1.0 392,353 + slmA Sama_0324 0.50 -1.8 392,385 - slmA Sama_0324 0.56 -1.4 392,385 - slmA Sama_0324 0.56 -2.2 392,385 - slmA Sama_0324 0.56 -1.5 392,385 - slmA Sama_0324 0.56 -1.0 392,385 - slmA Sama_0324 0.56 -1.4 392,438 - slmA Sama_0324 0.65 +0.6 392,438 - slmA Sama_0324 0.65 -1.4 392,438 - slmA Sama_0324 0.65 -1.6 392,438 - slmA Sama_0324 0.65 -1.0 392,462 - slmA Sama_0324 0.69 +0.3 392,462 - slmA Sama_0324 0.69 +0.6 392,511 + slmA Sama_0324 0.77 -1.1 392,534 + slmA Sama_0324 0.81 -1.0 392,534 + slmA Sama_0324 0.81 -1.2 392,535 - slmA Sama_0324 0.81 -3.2 392,535 - slmA Sama_0324 0.81 -1.9 392,560 + slmA Sama_0324 0.85 -2.0 392,560 + slmA Sama_0324 0.85 -2.2 392,560 + slmA Sama_0324 0.85 -1.1 392,560 + slmA Sama_0324 0.85 -1.7 392,560 + slmA Sama_0324 0.85 -1.7 392,561 - slmA Sama_0324 0.85 -1.5 392,563 + slmA Sama_0324 0.86 -0.4 392,563 + slmA Sama_0324 0.86 -2.0 392,563 + slmA Sama_0324 0.86 -1.7 392,563 + slmA Sama_0324 0.86 -0.9 392,563 + slmA Sama_0324 0.86 -1.0 392,563 + slmA Sama_0324 0.86 -1.2 392,563 + slmA Sama_0324 0.86 -1.8 392,563 + slmA Sama_0324 0.86 -1.1 392,563 + slmA Sama_0324 0.86 -3.6 392,563 + slmA Sama_0324 0.86 -0.8 392,563 + slmA Sama_0324 0.86 -2.8 392,563 + slmA Sama_0324 0.86 -3.1 392,563 + slmA Sama_0324 0.86 -2.2 392,563 + slmA Sama_0324 0.86 -1.4 392,563 + slmA Sama_0324 0.86 -1.9 392,563 + slmA Sama_0324 0.86 -1.7 392,564 - slmA Sama_0324 0.86 -2.8 392,564 - slmA Sama_0324 0.86 -1.6 392,564 - slmA Sama_0324 0.86 -1.6 392,564 - slmA Sama_0324 0.86 -3.5 392,564 - slmA Sama_0324 0.86 -1.0 392,564 - slmA Sama_0324 0.86 -1.7 392,564 - slmA Sama_0324 0.86 -0.1 392,564 - slmA Sama_0324 0.86 -1.5 392,564 - slmA Sama_0324 0.86 -1.4 392,564 - slmA Sama_0324 0.86 -2.8 392,564 - slmA Sama_0324 0.86 -2.2 392,564 - slmA Sama_0324 0.86 -1.1 392,564 - slmA Sama_0324 0.86 -0.9 392,564 - slmA Sama_0324 0.86 -1.8 392,611 + +0.5 392,611 + -1.2 392,612 - -0.6 392,612 - -0.4 392,612 - -2.5 392,612 - -1.0 392,664 + -1.1 392,664 + -0.9 392,664 + -2.2 392,664 + -1.0 392,665 - -1.4 392,665 - -0.4 392,665 - -0.2 392,809 + dut Sama_0325 0.29 -2.8 392,810 - dut Sama_0325 0.29 -0.2 392,810 - dut Sama_0325 0.29 -0.5 392,810 - dut Sama_0325 0.29 -0.4 392,857 + dut Sama_0325 0.39 -2.0 392,858 - dut Sama_0325 0.40 -1.1 392,892 + dut Sama_0325 0.47 -1.0 392,892 + dut Sama_0325 0.47 -1.4 392,892 + dut Sama_0325 0.47 -1.9 392,893 - dut Sama_0325 0.47 -0.0 392,893 - dut Sama_0325 0.47 -0.4 392,895 + dut Sama_0325 0.48 -0.8 392,895 + dut Sama_0325 0.48 -1.6 392,895 + dut Sama_0325 0.48 -1.4 392,895 + dut Sama_0325 0.48 -2.7 392,895 + dut Sama_0325 0.48 -1.6 392,895 + dut Sama_0325 0.48 -1.6 392,895 + dut Sama_0325 0.48 -2.0 392,895 + dut Sama_0325 0.48 -1.9 392,895 + dut Sama_0325 0.48 +0.5 392,896 - dut Sama_0325 0.48 -0.3 392,896 - dut Sama_0325 0.48 +0.8 392,896 - dut Sama_0325 0.48 -0.8 392,896 - dut Sama_0325 0.48 -1.4 392,896 - dut Sama_0325 0.48 -0.8 392,896 - dut Sama_0325 0.48 +0.6 392,906 + dut Sama_0325 0.50 -1.0 392,906 + dut Sama_0325 0.50 -1.4 392,907 - dut Sama_0325 0.50 -1.0 392,978 + dut Sama_0325 0.66 -0.8 392,979 - dut Sama_0325 0.66 +0.7 392,982 + dut Sama_0325 0.67 -1.8 392,982 + dut Sama_0325 0.67 -0.4 392,982 + dut Sama_0325 0.67 -0.7 392,982 + dut Sama_0325 0.67 -2.4 392,982 + dut Sama_0325 0.67 -2.0 392,982 + dut Sama_0325 0.67 -0.7 392,983 - dut Sama_0325 0.67 -1.3 392,983 - dut Sama_0325 0.67 -2.1 392,983 - dut Sama_0325 0.67 +0.4 392,983 - dut Sama_0325 0.67 +0.4 392,983 - dut Sama_0325 0.67 -0.4 393,006 + dut Sama_0325 0.72 -1.0 393,006 + dut Sama_0325 0.72 -1.6 393,007 - dut Sama_0325 0.72 -0.4 393,007 - dut Sama_0325 0.72 -0.7 393,035 + dut Sama_0325 0.78 +1.0 393,035 + dut Sama_0325 0.78 -0.4 393,035 + dut Sama_0325 0.78 -1.8 393,036 - dut Sama_0325 0.78 -0.5 393,036 - dut Sama_0325 0.78 +0.3 393,036 - dut Sama_0325 0.78 -0.8 393,067 + dut Sama_0325 0.85 -2.7 393,094 - -1.1 393,094 - -0.4 393,156 - +1.1
Or see this region's nucleotide sequence