Strain Fitness in Shewanella oneidensis MR-1 around SO3140.3

Experiment: Vanillin 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vanillin 1 mM
3,274,519	-				-0.2
3,274,522	+				-0.6
3,274,535	+				-0.4
3,274,579	+				-1.4
3,274,587	-				+0.6
3,274,593	+				-0.9
3,274,643	+				+0.8
3,274,651	-				-2.0
3,274,651	-				-0.1
3,274,700	-		SO3140.2	0.14	+0.3
3,274,708	-		SO3140.2	0.15	+0.9
3,274,734	-		SO3140.2	0.17	-0.0
3,274,806	-		SO3140.2	0.25	+0.6
3,274,823	-		SO3140.2	0.27	+0.2
3,274,870	+		SO3140.2	0.32	+0.0
3,275,011	-		SO3140.2	0.47	-0.9
3,275,081	+		SO3140.2	0.55	+0.0
3,275,089	-		SO3140.2	0.55	+0.5
3,275,114	+		SO3140.2	0.58	-0.2
3,275,232	+		SO3140.2	0.71	-0.5
3,275,240	-		SO3140.2	0.72	-0.4
3,275,280	-		SO3140.2	0.76	+0.9
3,275,289	-		SO3140.2	0.77	-0.2
3,275,313	+		SO3140.2	0.79	+0.5
3,275,371	+		SO3140.2	0.86	-0.1
3,275,379	-		SO3140.2	0.86	+0.8
3,275,379	-		SO3140.2	0.86	-0.6
3,275,379	-		SO3140.2	0.86	-0.0
3,275,379	-		SO3140.2	0.86	-0.6
3,275,489	-				-0.1
3,275,549	+		SO3140.3	0.13	+1.0
3,275,557	-		SO3140.3	0.15	+1.0
3,275,623	+		SO3140.3	0.33	+1.0
3,275,669	-		SO3140.3	0.46	-0.7
3,275,704	-		SO3140.3	0.55	+0.3
3,275,704	-		SO3140.3	0.55	+1.0
3,275,792	+		SO3140.3	0.79	+0.4
3,275,925	-		SO_3141	0.29	-0.2
3,275,944	+		SO_3141	0.39	+0.6
3,275,975	+		SO_3141	0.54	-1.1
3,276,007	+		SO_3141	0.70	+1.2
3,276,082	+				-1.1
3,276,090	-				+0.2
3,276,229	+				-0.4
3,276,237	-				-0.7
3,276,319	+				-0.2
3,276,335	-				-1.2
3,276,363	-				+0.6
3,276,493	+				-0.9
3,276,501	-				-0.7
3,276,558	-	dcp-1	SO3142	0.13	+0.5
3,276,596	-	dcp-1	SO3142	0.14	-0.0
3,276,596	-	dcp-1	SO3142	0.14	-0.0
3,276,630	-	dcp-1	SO3142	0.16	-0.6
3,276,643	+	dcp-1	SO3142	0.17	-0.1
3,276,643	+	dcp-1	SO3142	0.17	+0.3
3,276,643	+	dcp-1	SO3142	0.17	-0.0
3,276,643	+	dcp-1	SO3142	0.17	-0.4
3,276,643	+	dcp-1	SO3142	0.17	-0.6
3,276,651	-	dcp-1	SO3142	0.17	-2.0
3,276,651	-	dcp-1	SO3142	0.17	+0.3
3,276,651	-	dcp-1	SO3142	0.17	+0.1
3,276,711	-	dcp-1	SO3142	0.20	-0.2
3,276,770	-	dcp-1	SO3142	0.22	-0.4
3,276,775	+	dcp-1	SO3142	0.23	-0.7
3,276,775	+	dcp-1	SO3142	0.23	-0.5
3,276,784	-	dcp-1	SO3142	0.23	-0.1
3,276,837	-	dcp-1	SO3142	0.26	+0.1