Strain Fitness in Shewanella oneidensis MR-1 around SO4315

Experiment: Vanillin 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vanillin 1 mM
4,492,288	+				+0.9
4,492,529	+	hemX	SO4315	0.13	+0.2
4,492,598	+	hemX	SO4315	0.19	+1.2
4,492,629	+	hemX	SO4315	0.21	-0.3
4,492,630	+	hemX	SO4315	0.22	+0.6
4,492,630	+	hemX	SO4315	0.22	+1.2
4,492,630	+	hemX	SO4315	0.22	+0.5
4,492,638	-	hemX	SO4315	0.22	+0.2
4,492,638	-	hemX	SO4315	0.22	-0.9
4,492,648	+	hemX	SO4315	0.23	-0.1
4,492,842	-	hemX	SO4315	0.39	+0.1
4,492,864	-	hemX	SO4315	0.40	-0.3
4,492,880	+	hemX	SO4315	0.42	+0.3
4,492,885	+	hemX	SO4315	0.42	-0.0
4,492,888	-	hemX	SO4315	0.42	+0.1
4,492,888	-	hemX	SO4315	0.42	+1.1
4,492,888	-	hemX	SO4315	0.42	+0.3
4,492,888	-	hemX	SO4315	0.42	-0.0
4,492,893	-	hemX	SO4315	0.43	-0.6
4,492,893	-	hemX	SO4315	0.43	-0.4
4,492,959	+	hemX	SO4315	0.48	+0.5
4,492,995	+	hemX	SO4315	0.51	+0.6
4,493,031	+	hemX	SO4315	0.54	+1.0
4,493,112	-	hemX	SO4315	0.60	-0.2
4,493,112	-	hemX	SO4315	0.60	-0.2
4,493,448	-	hemX	SO4315	0.87	-0.6
4,493,456	-	hemX	SO4315	0.88	+0.4
4,493,457	+	hemX	SO4315	0.88	+0.0
4,493,692	-				+1.4
4,493,764	+		SO4316	0.14	+0.5
4,493,807	+		SO4316	0.17	+0.0
4,493,839	-		SO4316	0.20	+1.0
4,493,865	+		SO4316	0.22	-0.8
4,493,940	+		SO4316	0.29	+0.3
4,494,107	+		SO4316	0.43	-0.4
4,494,109	-		SO4316	0.43	+0.2
4,494,112	+		SO4316	0.44	+0.2
4,494,164	+		SO4316	0.48	+0.2
4,494,177	+		SO4316	0.49	+0.2
4,494,185	-		SO4316	0.50	+0.3
4,494,185	-		SO4316	0.50	+0.3
4,494,190	-		SO4316	0.50	+1.0
4,494,210	-		SO4316	0.52	+0.5
4,494,292	+		SO4316	0.59	+1.2
4,494,292	-		SO4316	0.59	+0.3
4,494,336	+		SO4316	0.63	-2.4
4,494,344	-		SO4316	0.63	-0.4
4,494,374	-		SO4316	0.66	+0.1
4,494,410	+		SO4316	0.69	-0.6
4,494,418	-		SO4316	0.70	-0.6