Strain Fitness in Shewanella oneidensis MR-1 around SO3729

Experiment: Vanillin 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vanillin 1 mM
3,872,064	-	cobA	SO3728	0.31	+0.3
3,872,126	+	cobA	SO3728	0.39	+0.1
3,872,134	-	cobA	SO3728	0.40	+0.6
3,872,176	+	cobA	SO3728	0.45	+0.4
3,872,305	-	cobA	SO3728	0.60	+0.0
3,872,511	-	cobA	SO3728	0.85	-0.8
3,872,586	+				+0.2
3,872,590	+				-0.7
3,872,659	-				+1.2
3,872,738	+				-0.5
3,872,746	-				-0.0
3,872,764	+				-0.4
3,872,864	+				+0.3
3,872,872	-				+1.1
3,873,046	+				+1.1
3,873,046	+				+0.0
3,873,112	+		SO3729	0.34	-1.1
3,873,112	+		SO3729	0.34	-0.6
3,873,120	-		SO3729	0.39	-1.1
3,873,122	-		SO3729	0.41	-0.7
3,873,179	+		SO3729	0.79	+0.0
3,873,203	-				+1.0
3,873,224	+				+1.5
3,873,224	+				+0.2
3,873,248	+				+0.2
3,873,253	+				-0.8
3,873,261	-				-0.1
3,873,261	-				+0.6
3,873,261	-				+0.6
3,873,405	-				+0.2
3,873,448	+		SO_3730	0.14	+0.8
3,873,523	+		SO_3730	0.25	+0.4
3,873,531	-		SO_3730	0.27	-0.8
3,873,599	-		SO_3730	0.37	-0.0
3,873,599	-		SO_3730	0.37	-0.4
3,873,752	+		SO_3730	0.60	+0.3
3,873,824	-		SO_3730	0.71	+0.4
3,873,968	+				-0.5
3,874,160	+				-0.3
3,874,160	-				-0.6
3,874,168	-				-0.7
3,874,168	-				+0.2