Strain Fitness in Shewanella oneidensis MR-1 around SO3552

Experiment: Vanillin 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vanillin 1 mM
3,707,610	+		SO3550	0.88	+0.5
3,707,716	+				+0.1
3,707,920	+		SO3551	0.37	+0.6
3,707,920	+		SO3551	0.37	+0.9
3,707,928	-		SO3551	0.39	+0.1
3,707,928	-		SO3551	0.39	-0.3
3,707,959	+		SO3551	0.44	+1.0
3,708,030	+		SO3551	0.56	-0.6
3,708,039	-		SO3551	0.57	-0.0
3,708,056	+		SO3551	0.60	-0.1
3,708,064	-		SO3551	0.61	+1.0
3,708,121	+		SO3551	0.71	+0.4
3,708,127	+		SO3551	0.72	+1.2
3,708,218	+		SO3551	0.87	+0.5
3,708,226	-		SO3551	0.88	+0.7
3,708,235	+		SO3551	0.90	+0.3
3,708,267	-				+0.7
3,708,300	-				-0.2
3,708,491	+				-0.7
3,708,572	-		SO3552	0.12	+0.6
3,708,637	+		SO3552	0.16	-1.0
3,708,640	-		SO3552	0.16	+0.8
3,708,754	+		SO3552	0.22	-0.2
3,708,794	-		SO3552	0.24	-0.9
3,708,794	-		SO3552	0.24	+0.3
3,708,822	+		SO3552	0.26	-0.4
3,708,822	+		SO3552	0.26	+0.2
3,708,830	-		SO3552	0.26	-0.3
3,708,830	-		SO3552	0.26	-0.2
3,708,830	-		SO3552	0.26	+0.3
3,708,831	-		SO3552	0.26	-1.7
3,708,855	-		SO3552	0.27	-0.4
3,708,855	-		SO3552	0.27	-0.4
3,708,887	-		SO3552	0.29	-1.6
3,709,152	+		SO3552	0.43	+0.6
3,709,295	-		SO3552	0.51	-0.3
3,709,318	-		SO3552	0.52	-0.1
3,709,383	-		SO3552	0.56	-2.0
3,709,399	+		SO3552	0.56	-0.4
3,709,446	+		SO3552	0.59	-0.1
3,709,528	+		SO3552	0.63	+0.2
3,709,528	+		SO3552	0.63	-0.3
3,709,546	-		SO3552	0.64	-1.3
3,709,546	-		SO3552	0.64	-0.4
3,709,546	-		SO3552	0.64	-0.4
3,709,547	+		SO3552	0.64	-0.3
3,709,556	-		SO3552	0.65	+0.6
3,709,640	+		SO3552	0.69	-0.3
3,709,735	-		SO3552	0.74	-1.0
3,709,885	+		SO3552	0.83	-0.4
3,709,912	+		SO3552	0.84	+0.7
3,709,915	-		SO3552	0.84	-1.0
3,710,001	-		SO3552	0.89	-0.3
3,710,212	+				+0.2
3,710,220	-				-0.8
3,710,238	+				-0.2
3,710,378	-				-0.8
3,710,383	+				+0.6
3,710,423	-				-0.3
3,710,531	+				+0.9
3,710,563	+				-1.1
3,710,608	+		SO3553	0.11	+0.2
3,710,704	-		SO3553	0.17	-1.2
3,710,735	+		SO3553	0.18	+0.5
3,710,751	+		SO3553	0.19	+0.3
3,710,751	+		SO3553	0.19	-2.0
3,710,787	+		SO3553	0.21	-0.1
3,710,788	+		SO3553	0.21	-1.0
3,710,839	-		SO3553	0.24	+0.3
3,710,840	-		SO3553	0.24	+0.1
3,710,840	-		SO3553	0.24	+1.3
3,710,840	-		SO3553	0.24	-0.4
3,710,840	-		SO3553	0.24	-0.4
3,710,913	+		SO3553	0.28	-0.3
3,710,916	-		SO3553	0.29	+0.3
3,710,926	-		SO3553	0.29	-0.2
3,710,926	-		SO3553	0.29	+0.3
3,710,953	+		SO3553	0.31	+0.0
3,710,982	-		SO3553	0.32	+0.3
3,710,983	+		SO3553	0.32	-0.1
3,710,991	-		SO3553	0.33	-1.4
3,711,001	-		SO3553	0.33	-0.2
3,711,011	+		SO3553	0.34	-0.7
3,711,011	+		SO3553	0.34	+0.1
3,711,073	-		SO3553	0.37	+0.0
3,711,077	+		SO3553	0.38	-1.1