Strain Fitness in Shewanella oneidensis MR-1 around SO3063

Experiment: Vanillin 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vanillin 1 mM
3,177,735	-				+0.0
3,177,903	-				-0.3
3,177,969	-				+0.4
3,178,041	-				-1.7
3,178,151	+		SO3062	0.36	-0.4
3,178,159	-		SO3062	0.39	-0.3
3,178,247	+		SO3062	0.69	-0.6
3,178,388	+				-0.2
3,178,411	+				+0.9
3,178,500	+				-0.3
3,178,531	+				+0.2
3,178,660	-				+0.6
3,178,818	+		SO3063	0.13	+0.4
3,178,818	+		SO3063	0.13	-0.1
3,178,831	-		SO3063	0.14	-0.2
3,178,956	+		SO3063	0.22	+1.5
3,178,962	+		SO3063	0.22	-0.2
3,179,004	+		SO3063	0.25	+0.5
3,179,103	+		SO3063	0.32	+0.2
3,179,160	-		SO3063	0.36	+2.8
3,179,261	+		SO3063	0.42	+0.2
3,179,430	+		SO3063	0.54	+0.4
3,179,430	+		SO3063	0.54	-0.6
3,179,438	-		SO3063	0.54	+0.5
3,179,466	+		SO3063	0.56	-0.0
3,179,547	+		SO3063	0.62	+0.6
3,179,580	+		SO3063	0.64	+0.8
3,179,587	+		SO3063	0.64	+0.5
3,179,595	-		SO3063	0.65	+0.8
3,179,665	+		SO3063	0.70	+0.6
3,179,690	-		SO3063	0.71	+0.8
3,180,065	+				-0.2
3,180,065	+				+0.4
3,180,203	+				-0.4
3,180,236	-				-1.0
3,180,242	-				+0.2
3,180,293	-				-0.7
3,180,343	-				-0.3
3,180,669	+	purF	SO3064	0.30	-0.8
3,180,886	-	purF	SO3064	0.44	+0.9
3,180,897	-	purF	SO3064	0.45	+1.1