Strain Fitness in Shewanella oneidensis MR-1 around SO2953

Experiment: Vanillin 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vanillin 1 mM
3,089,596	+		SO2951	0.76	+0.3
3,089,641	+		SO2951	0.78	-0.5
3,089,641	+		SO2951	0.78	+0.3
3,089,646	+		SO2951	0.78	+0.2
3,089,666	-		SO2951	0.79	-0.2
3,089,678	+		SO2951	0.80	+2.6
3,089,698	+		SO2951	0.81	-0.8
3,089,711	+		SO2951	0.81	-0.4
3,089,795	+		SO2951	0.85	+1.1
3,089,795	+		SO2951	0.85	+0.6
3,089,804	-		SO2951	0.86	-0.7
3,089,858	+		SO2951	0.88	+0.4
3,089,878	-		SO2951	0.89	-0.4
3,089,905	-				-1.9
3,089,915	-				-0.6
3,089,917	+				+0.1
3,089,939	-				+0.8
3,089,987	+				-0.3
3,089,987	+				-0.5
3,089,995	-				+0.2
3,090,198	+		SO2952	0.18	+0.3
3,090,211	-		SO2952	0.21	-1.0
3,090,246	-		SO2952	0.32	-1.2
3,090,246	-		SO2952	0.32	-1.4
3,090,271	+		SO2952	0.39	-0.1
3,090,271	+		SO2952	0.39	-0.7
3,090,310	-		SO2952	0.51	-0.2
3,090,343	+		SO2952	0.61	-0.2
3,090,343	+		SO2952	0.61	-0.0
3,090,351	-		SO2952	0.63	-1.3
3,090,351	-		SO2952	0.63	+0.1
3,090,442	+				-0.5
3,090,490	+				-1.8
3,090,693	+				-0.0
3,090,701	-				+0.1
3,090,701	-				-0.0
3,090,701	-				+0.2
3,090,701	-				-0.2
3,090,726	+				+0.1
3,090,734	-				+0.0
3,090,734	-				-0.3
3,090,994	+	H	SO2953	0.19	-1.7
3,091,089	-	H	SO2953	0.22	-1.6
3,091,115	-	H	SO2953	0.23	+0.6
3,091,173	-	H	SO2953	0.25	-0.2
3,091,184	+	H	SO2953	0.26	-0.4
3,091,256	+	H	SO2953	0.28	-0.3
3,091,276	+	H	SO2953	0.29	-0.1
3,091,352	+	H	SO2953	0.32	-0.3
3,091,355	-	H	SO2953	0.32	-0.7
3,091,360	-	H	SO2953	0.32	-1.2
3,091,417	+	H	SO2953	0.34	-0.8
3,091,420	-	H	SO2953	0.34	-1.0
3,091,442	-	H	SO2953	0.35	+0.1
3,091,552	-	H	SO2953	0.39	-0.4
3,091,661	-	H	SO2953	0.43	-0.3
3,091,732	-	H	SO2953	0.46	-0.4
3,091,771	+	H	SO2953	0.47	+1.0
3,091,779	-	H	SO2953	0.48	-0.0
3,091,943	+	H	SO2953	0.54	-0.3
3,091,951	-	H	SO2953	0.54	-0.9
3,091,974	-	H	SO2953	0.55	-0.8
3,091,974	-	H	SO2953	0.55	-0.3
3,092,031	+	H	SO2953	0.57	-0.4
3,092,095	+	H	SO2953	0.59	-0.3
3,092,195	+	H	SO2953	0.63	-0.5
3,092,362	+	H	SO2953	0.69	+0.0
3,092,536	+	H	SO2953	0.75	-0.0
3,092,544	-	H	SO2953	0.75	-0.4
3,092,675	-	H	SO2953	0.80	-0.3
3,092,733	+	H	SO2953	0.82	-0.8
3,092,767	+	H	SO2953	0.84	-1.4
3,092,907	-	H	SO2953	0.89	-1.2
3,092,920	+	H	SO2953	0.89	-0.6
3,092,933	-	H	SO2953	0.90	+0.1
3,093,139	+				+0.3
3,093,280	-				-1.1
3,093,426	+		SO2954	0.89	-0.1
3,093,461	+				-0.5
3,093,594	+		SO2955	0.23	-0.1
3,093,635	-		SO2955	0.31	+0.7
3,093,870	+		SO2955	0.79	+0.8
3,093,915	+		SO2955	0.88	-0.8
3,094,082	-				-0.2
3,094,166	+		SO2956	0.22	-0.6
3,094,166	+		SO2956	0.22	-0.4
3,094,183	+		SO2956	0.25	+0.1