Strain Fitness in Shewanella oneidensis MR-1 around SO2939

Experiment: Vanillin 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vanillin 1 mM
3,074,517	+				-0.4
3,074,549	-				-0.4
3,074,558	+				+1.1
3,074,561	-				-0.5
3,074,568	+				-0.0
3,074,680	+				+1.1
3,074,683	+				-0.6
3,074,688	-				+0.0
3,074,701	-				+0.7
3,074,730	+				+0.1
3,074,730	+				-0.2
3,074,738	-				+0.6
3,074,738	-				+1.1
3,074,738	-				+0.6
3,074,738	-				+0.1
3,074,873	+				-0.4
3,074,886	-				-0.4
3,074,908	+				-0.9
3,074,996	+		SO2938	0.24	+0.0
3,075,071	+		SO2938	0.38	-1.1
3,075,071	+		SO2938	0.38	-0.2
3,075,071	+		SO2938	0.38	-0.2
3,075,071	+		SO2938	0.38	+0.6
3,075,132	-		SO2938	0.49	-0.9
3,075,154	-		SO2938	0.53	-0.6
3,075,176	+		SO2938	0.57	-1.1
3,075,206	+		SO2938	0.63	-0.9
3,075,297	-		SO2938	0.79	-1.0
3,075,307	-		SO2938	0.81	-0.3
3,075,307	-		SO2938	0.81	-0.3
3,075,333	-		SO2938	0.86	-0.3
3,075,446	+				-0.4
3,075,446	+				+0.0
3,075,524	-		SO2939	0.16	-0.1
3,075,541	-		SO2939	0.19	-0.8
3,075,594	+		SO2939	0.26	-1.1
3,075,596	+		SO2939	0.26	-0.2
3,075,596	+		SO2939	0.26	+0.5
3,075,597	-		SO2939	0.26	-1.4
3,075,597	-		SO2939	0.26	-0.4
3,075,604	-		SO2939	0.27	+0.4
3,075,604	-		SO2939	0.27	-0.3
3,075,604	-		SO2939	0.27	+0.2
3,075,609	-		SO2939	0.28	-1.9
3,075,663	+		SO2939	0.36	-0.6
3,075,671	-		SO2939	0.37	-0.2
3,075,685	+		SO2939	0.39	-0.3
3,075,693	-		SO2939	0.40	+0.2
3,075,760	+		SO2939	0.49	-0.3
3,075,827	+		SO2939	0.59	+1.3
3,075,865	+		SO2939	0.64	-0.0
3,075,873	-		SO2939	0.65	+0.2
3,075,873	-		SO2939	0.65	-1.3
3,075,873	-		SO2939	0.65	+0.3
3,075,881	-		SO2939	0.66	-1.3
3,075,906	+		SO2939	0.70	-0.1
3,075,944	-		SO2939	0.75	-0.7
3,075,946	-		SO2939	0.76	-1.2
3,076,114	+				-0.3
3,076,114	+				-0.0
3,076,149	+				-0.9
3,076,150	+				+0.4
3,076,157	-				-1.3
3,076,158	-				-1.1
3,076,158	-				+0.2
3,076,169	-				+0.4
3,076,169	-				-0.4
3,076,190	-				-0.2
3,076,205	+				-1.0
3,076,219	+				-0.2
3,076,260	+				+0.3
3,076,268	+				+0.4
3,076,275	+				-1.0
3,076,275	+				+0.0
3,076,292	+				-0.4
3,076,334	-				+0.1
3,076,344	-				+0.9
3,076,354	-				-0.7
3,076,355	-				-0.0
3,076,362	-				-1.4
3,076,384	+				-0.4
3,076,397	-				+0.3
3,076,434	+				+0.4
3,076,442	-				-0.6
3,076,524	+				+0.5
3,076,524	+				+0.7
3,076,532	-				-0.4
3,076,566	-				-0.4
3,076,567	-				+0.7
3,076,572	-				+0.2
3,076,621	+				-0.4
3,076,686	+				-0.5
3,076,694	-				-0.7
3,076,694	-				+0.3
3,076,704	-				+0.2
3,076,784	+				+0.6
3,076,784	+				+0.2
3,076,794	+				-0.3
3,076,802	-				+0.4
3,076,927	+		SO2940	0.12	+0.5
3,076,952	-		SO2940	0.13	+0.2
3,076,964	-		SO2940	0.13	+0.1
3,077,023	+		SO2940	0.14	-1.6
3,077,030	+		SO2940	0.15	+0.8
3,077,031	-		SO2940	0.15	-0.1
3,077,035	+		SO2940	0.15	+0.1
3,077,035	+		SO2940	0.15	-0.7
3,077,040	+		SO2940	0.15	+1.0
3,077,040	+		SO2940	0.15	+0.1
3,077,040	+		SO2940	0.15	-1.1
3,077,040	+		SO2940	0.15	-0.1
3,077,043	-		SO2940	0.15	-1.0
3,077,048	-		SO2940	0.15	-1.2
3,077,088	-		SO2940	0.16	+0.1
3,077,119	+		SO2940	0.17	-0.3