Strain Fitness in Shewanella oneidensis MR-1 around SO2700

Experiment: Vanillin 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vanillin 1 mM
2,817,423	-		SO2699	0.17	+0.6
2,817,467	-		SO2699	0.21	-0.6
2,817,632	-		SO2699	0.36	-0.1
2,817,632	-		SO2699	0.36	+0.1
2,817,669	-		SO2699	0.40	+0.3
2,817,695	-		SO2699	0.42	+1.0
2,817,729	+		SO2699	0.45	-0.0
2,817,771	+		SO2699	0.49	-0.2
2,817,823	+		SO2699	0.54	-0.8
2,817,831	-		SO2699	0.55	+0.2
2,817,877	+		SO2699	0.59	-0.3
2,817,948	-		SO2699	0.66	-0.7
2,818,097	+		SO2699	0.79	+2.3
2,818,103	-		SO2699	0.80	-0.7
2,818,123	+		SO2699	0.82	+0.1
2,818,213	+				+0.7
2,818,245	-				-0.1
2,818,269	+				-0.7
2,818,341	+				-0.6
2,818,385	-		SO2700	0.11	-0.7
2,818,753	-		SO2700	0.68	-1.0
2,818,753	-		SO2700	0.68	-0.6
2,818,772	-		SO2700	0.71	-1.9
2,818,810	-		SO2700	0.77	+1.0
2,819,015	-		SO2701	0.12	-1.1
2,819,066	+		SO2701	0.23	-0.5
2,819,121	-		SO2701	0.35	+0.2
2,819,156	+		SO2701	0.43	+0.0
2,819,164	+		SO2701	0.44	+0.4
2,819,221	-		SO2701	0.57	-1.6
2,819,313	-		SO2701	0.77	+0.2
2,819,313	-		SO2701	0.77	+0.5
2,819,326	-		SO2701	0.80	-0.8
2,819,392	-				-0.1
2,819,417	-				-0.4
2,819,498	+				-0.1
2,819,860	+		SO2702	0.42	-0.4
2,819,940	-		SO2702	0.50	+0.0