Strain Fitness in Shewanella oneidensis MR-1 around SO2629

Experiment: Vanillin 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vanillin 1 mM
2,763,591	-				-0.2
2,763,592	+				+0.3
2,763,601	-				+1.1
2,763,777	-		SO2627	0.59	-0.3
2,763,835	-		SO2627	0.78	-0.5
2,763,887	-				+0.1
2,764,165	-	cspD	SO2628	0.33	+0.0
2,764,186	+	cspD	SO2628	0.43	-0.4
2,764,209	+	cspD	SO2628	0.54	+0.3
2,764,261	-	cspD	SO2628	0.79	-0.2
2,764,441	-				+1.0
2,764,640	-				+0.0
2,764,642	-				-0.2
2,764,726	-				-0.2
2,764,736	-				+0.0
2,764,736	-				+0.4
2,764,866	+	icd	SO2629	0.15	+0.0
2,764,880	-	icd	SO2629	0.16	-0.7
2,765,012	-	icd	SO2629	0.22	+1.6
2,765,076	-	icd	SO2629	0.25	+0.0
2,765,152	+	icd	SO2629	0.28	-1.1
2,765,311	-	icd	SO2629	0.35	+0.7
2,765,593	-	icd	SO2629	0.48	-0.1
2,765,617	+	icd	SO2629	0.49	-0.2
2,765,662	-	icd	SO2629	0.51	+0.5
2,765,772	+	icd	SO2629	0.56	-0.2
2,765,780	-	icd	SO2629	0.56	-0.1
2,765,780	-	icd	SO2629	0.56	+0.9
2,765,984	-	icd	SO2629	0.66	-2.9
2,765,984	-	icd	SO2629	0.66	-0.5
2,765,984	-	icd	SO2629	0.66	+0.0
2,765,984	-	icd	SO2629	0.66	+0.2
2,766,072	-	icd	SO2629	0.70	-0.5
2,766,121	+	icd	SO2629	0.72	+0.3
2,766,152	-	icd	SO2629	0.73	+0.8
2,766,173	-	icd	SO2629	0.74	+0.8
2,766,173	-	icd	SO2629	0.74	+0.1
2,766,173	-	icd	SO2629	0.74	+1.7
2,766,215	+	icd	SO2629	0.76	-1.6
2,766,218	-	icd	SO2629	0.76	+0.6
2,766,240	-	icd	SO2629	0.77	+0.8
2,766,339	-	icd	SO2629	0.82	-1.1
2,766,339	-	icd	SO2629	0.82	+1.4
2,766,339	-	icd	SO2629	0.82	-0.7
2,766,339	-	icd	SO2629	0.82	+0.4
2,766,345	-	icd	SO2629	0.82	+0.1
2,766,425	+	icd	SO2629	0.85	-0.3
2,766,445	+	icd	SO2629	0.86	-0.8
2,766,873	-				+1.1
2,767,076	+				+0.2
2,767,127	-				+0.4
2,767,140	+				+0.0
2,767,165	+				+0.2
2,767,179	+		SO_2630	0.11	-0.1
2,767,364	+		SO_2630	0.34	+0.5
2,767,741	+		SO_2630	0.82	-0.7