Strain Fitness in Shewanella oneidensis MR-1 around SO2542

Experiment: Vanillin 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vanillin 1 mM
2,672,440	-		SO2541	0.27	-0.9
2,672,454	+		SO2541	0.28	-0.9
2,672,455	+		SO2541	0.28	+0.5
2,672,534	+		SO2541	0.34	+0.3
2,672,689	+		SO2541	0.46	+1.6
2,672,689	+		SO2541	0.46	+0.6
2,672,689	+		SO2541	0.46	+0.0
2,672,689	+		SO2541	0.46	-0.0
2,672,697	-		SO2541	0.46	+0.3
2,672,747	-		SO2541	0.50	-0.4
2,672,752	+		SO2541	0.51	-0.2
2,672,762	+		SO2541	0.51	-0.6
2,672,762	+		SO2541	0.51	+0.4
2,672,762	+		SO2541	0.51	+0.4
2,672,814	-		SO2541	0.55	-0.1
2,673,065	+		SO2541	0.74	+0.1
2,673,109	+		SO2541	0.77	-0.5
2,673,122	-		SO2541	0.78	+0.4
2,673,233	+		SO2541	0.87	+1.0
2,673,271	+		SO2541	0.90	-0.6
2,673,271	+		SO2541	0.90	+1.1
2,673,271	+		SO2541	0.90	-0.4
2,673,279	-				+0.7
2,673,279	-				-0.4
2,673,279	-				+0.4
2,673,279	-				+1.7
2,673,321	-				-0.1
2,673,321	-				+0.4
2,673,379	-				+0.2
2,673,401	+				+0.1
2,673,470	-				+0.3
2,673,493	+				+0.3
2,673,557	-		SO2542	0.12	+0.0
2,673,590	-		SO2542	0.14	+0.1
2,673,591	-		SO2542	0.14	-0.2
2,673,685	-		SO2542	0.22	+0.6
2,673,719	-		SO2542	0.25	-0.0
2,673,736	-		SO2542	0.27	-0.4
2,673,761	-		SO2542	0.29	-0.2
2,673,780	-		SO2542	0.30	-0.5
2,674,074	+		SO2542	0.55	+0.3
2,674,074	+		SO2542	0.55	+0.5
2,674,082	-		SO2542	0.56	+0.7
2,674,082	-		SO2542	0.56	+0.9
2,674,135	-		SO2542	0.60	+0.9
2,674,141	+		SO2542	0.61	+0.5
2,674,160	+		SO2542	0.62	+0.8
2,674,170	+		SO2542	0.63	+0.1
2,674,170	+		SO2542	0.63	+1.0
2,674,170	+		SO2542	0.63	-0.4
2,674,170	+		SO2542	0.63	-0.6
2,674,170	+		SO2542	0.63	-0.5
2,674,173	-		SO2542	0.63	+0.9
2,674,178	-		SO2542	0.64	+0.2
2,674,178	-		SO2542	0.64	+1.2
2,674,178	-		SO2542	0.64	-0.4
2,674,178	-		SO2542	0.64	-0.2
2,674,179	-		SO2542	0.64	+0.4
2,674,193	+		SO2542	0.65	+1.3
2,674,217	+		SO2542	0.67	+1.0
2,674,225	-		SO2542	0.68	+0.4
2,674,235	+		SO2542	0.69	+0.9
2,674,243	-		SO2542	0.69	-0.2
2,674,274	+		SO2542	0.72	-0.1
2,674,282	+		SO2542	0.73	+0.2
2,674,282	-		SO2542	0.73	+0.9
2,674,287	-		SO2542	0.73	+0.4
2,674,322	-		SO2542	0.76	-0.2
2,674,322	-		SO2542	0.76	-0.3
2,674,344	+		SO2542	0.78	-0.2
2,674,350	+		SO2542	0.78	+0.2
2,674,387	-		SO2542	0.81	+0.2
2,674,432	-		SO2542	0.85	-1.0
2,674,454	+		SO2542	0.87	-0.4
2,674,477	-		SO2542	0.89	-0.2
2,674,553	-				-1.4
2,674,584	+				-0.5
2,674,601	-				-0.4
2,674,793	-		SO2543	0.14	-0.5
2,674,853	+		SO2543	0.18	-0.5
2,674,853	+		SO2543	0.18	-0.6
2,674,897	+		SO2543	0.22	-1.3
2,674,905	-		SO2543	0.22	+0.5
2,674,905	-		SO2543	0.22	-0.0
2,674,907	-		SO2543	0.22	-0.3
2,674,915	-		SO2543	0.23	-0.5
2,674,915	-		SO2543	0.23	-0.4
2,674,915	-		SO2543	0.23	+1.2
2,674,915	-		SO2543	0.23	+0.2
2,674,978	+		SO2543	0.27	+1.0
2,675,009	-		SO2543	0.30	+0.4
2,675,033	+		SO2543	0.31	+0.6
2,675,033	+		SO2543	0.31	-0.6
2,675,040	+		SO2543	0.32	-0.1
2,675,048	-		SO2543	0.32	+0.2
2,675,084	+		SO2543	0.35	+0.8
2,675,092	-		SO2543	0.36	+0.5
2,675,092	-		SO2543	0.36	-0.1
2,675,097	+		SO2543	0.36	-0.1
2,675,113	+		SO2543	0.37	+0.3
2,675,121	-		SO2543	0.38	+0.4
2,675,121	-		SO2543	0.38	-0.2
2,675,128	+		SO2543	0.38	+0.0
2,675,128	+		SO2543	0.38	-0.5
2,675,128	+		SO2543	0.38	-0.0
2,675,128	+		SO2543	0.38	+1.8
2,675,128	+		SO2543	0.38	-0.4
2,675,128	+		SO2543	0.38	-0.0
2,675,128	+		SO2543	0.38	-1.6
2,675,128	+		SO2543	0.38	+0.0
2,675,128	+		SO2543	0.38	+0.7
2,675,128	+		SO2543	0.38	-0.6
2,675,128	+		SO2543	0.38	+0.2
2,675,128	+		SO2543	0.38	-1.1
2,675,128	+		SO2543	0.38	-0.4
2,675,136	-		SO2543	0.39	-0.6
2,675,136	-		SO2543	0.39	+0.7
2,675,136	-		SO2543	0.39	-0.0
2,675,136	-		SO2543	0.39	-0.1
2,675,136	-		SO2543	0.39	+1.1
2,675,136	-		SO2543	0.39	+1.0
2,675,136	-		SO2543	0.39	+0.4
2,675,136	-		SO2543	0.39	-0.8
2,675,136	-		SO2543	0.39	-0.3
2,675,136	-		SO2543	0.39	-1.9
2,675,136	-		SO2543	0.39	+1.0
2,675,136	-		SO2543	0.39	+0.6
2,675,136	-		SO2543	0.39	+0.4
2,675,136	-		SO2543	0.39	+1.5
2,675,136	-		SO2543	0.39	-0.4
2,675,136	-		SO2543	0.39	-1.7
2,675,136	-		SO2543	0.39	+0.5
2,675,136	-		SO2543	0.39	+1.6
2,675,165	+		SO2543	0.41	-0.4
2,675,194	-		SO2543	0.43	-0.8
2,675,199	+		SO2543	0.43	+0.2
2,675,199	+		SO2543	0.43	-0.3
2,675,199	+		SO2543	0.43	+0.9
2,675,204	+		SO2543	0.44	+0.3
2,675,209	+		SO2543	0.44	+1.1
2,675,209	+		SO2543	0.44	+0.4
2,675,217	-		SO2543	0.45	+0.3
2,675,217	-		SO2543	0.45	-0.8
2,675,219	+		SO2543	0.45	-0.4
2,675,219	+		SO2543	0.45	-0.6
2,675,227	-		SO2543	0.45	+0.8
2,675,227	-		SO2543	0.45	+0.0
2,675,250	-		SO2543	0.47	-1.5
2,675,253	+		SO2543	0.47	+1.8
2,675,253	+		SO2543	0.47	+0.2
2,675,253	+		SO2543	0.47	-1.0
2,675,260	-		SO2543	0.48	-0.8
2,675,261	-		SO2543	0.48	-0.2
2,675,270	+		SO2543	0.49	+1.0
2,675,308	-		SO2543	0.51	-0.3
2,675,308	-		SO2543	0.51	+0.1
2,675,308	-		SO2543	0.51	-0.5
2,675,354	+		SO2543	0.55	-0.3
2,675,360	+		SO2543	0.55	+0.1
2,675,362	-		SO2543	0.55	+1.0
2,675,362	-		SO2543	0.55	-0.0
2,675,374	-		SO2543	0.56	+0.4
2,675,382	-		SO2543	0.57	+0.3
2,675,422	+		SO2543	0.60	+1.7
2,675,430	-		SO2543	0.60	-0.4
2,675,450	-		SO2543	0.62	+0.3
2,675,451	+		SO2543	0.62	+0.6
2,675,451	+		SO2543	0.62	-0.4
2,675,451	+		SO2543	0.62	-0.6
2,675,451	+		SO2543	0.62	-1.1
2,675,451	+		SO2543	0.62	-0.5
2,675,451	+		SO2543	0.62	-0.2
2,675,451	+		SO2543	0.62	+0.4
2,675,451	+		SO2543	0.62	-1.1
2,675,451	-		SO2543	0.62	-0.5
2,675,452	+		SO2543	0.62	+0.1
2,675,459	-		SO2543	0.62	-0.5
2,675,459	-		SO2543	0.62	-0.9
2,675,459	-		SO2543	0.62	-0.7
2,675,459	-		SO2543	0.62	+0.1
2,675,459	-		SO2543	0.62	-0.3
2,675,459	-		SO2543	0.62	-0.1
2,675,460	-		SO2543	0.62	+0.1
2,675,460	-		SO2543	0.62	-0.4
2,675,461	+		SO2543	0.62	-0.2
2,675,469	-		SO2543	0.63	-0.6
2,675,474	-		SO2543	0.63	+1.4
2,675,474	-		SO2543	0.63	-1.9
2,675,533	+		SO2543	0.68	-0.5
2,675,540	+		SO2543	0.68	-0.2
2,675,548	-		SO2543	0.69	+1.0
2,675,548	-		SO2543	0.69	+0.1
2,675,561	-		SO2543	0.70	+0.4
2,675,565	+		SO2543	0.70	+0.5