Strain Fitness in Shewanella oneidensis MR-1 around SO2053

Experiment: Vanillin 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vanillin 1 mM
2,151,814	+		SO2052	0.33	+0.2
2,151,864	-		SO2052	0.37	-0.3
2,151,897	+		SO2052	0.40	+1.2
2,152,096	+		SO2052	0.55	-0.6
2,152,156	+		SO2052	0.60	-1.0
2,152,269	+		SO2052	0.69	-0.8
2,153,237	-		SO2053	0.55	-0.8
2,153,268	+		SO2053	0.59	+0.1
2,153,306	-		SO2053	0.63	-0.5
2,153,361	-		SO2053	0.69	-0.8
2,153,398	+		SO2053	0.74	-0.3
2,153,455	+		SO2053	0.80	-0.7
2,153,774	-				+0.7
2,153,794	+				-1.2
2,153,889	+				-0.5
2,153,889	+				-0.0
2,153,897	-				+0.3
2,153,897	-				-0.2
2,153,957	-				+0.3
2,153,971	+				+0.0
2,153,979	-	adhC	SO2054	0.10	-0.5
2,154,036	+	adhC	SO2054	0.15	+1.0
2,154,103	+	adhC	SO2054	0.21	-0.2
2,154,111	-	adhC	SO2054	0.22	+0.6
2,154,223	+	adhC	SO2054	0.32	-0.0
2,154,394	-	adhC	SO2054	0.47	-0.7
2,154,402	+	adhC	SO2054	0.48	-0.7
2,154,425	-	adhC	SO2054	0.50	-0.6