Strain Fitness in Shewanella oneidensis MR-1 around SO1852

Experiment: Vanillin 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vanillin 1 mM
1,942,157	-		SO1851	0.60	-1.5
1,942,395	+		SO1851	0.71	-1.1
1,942,437	+		SO1851	0.73	-2.5
1,942,448	+		SO1851	0.74	+0.0
1,942,538	-		SO1851	0.78	+0.2
1,942,540	+		SO1851	0.78	+0.8
1,942,548	-		SO1851	0.78	-0.1
1,942,569	-		SO1851	0.79	-1.2
1,942,569	-		SO1851	0.79	-0.3
1,942,569	-		SO1851	0.79	+2.8
1,942,685	-		SO1851	0.85	-0.5
1,942,775	+		SO1851	0.89	-1.0
1,942,835	-				-0.4
1,942,871	+				+0.8
1,942,915	+				-0.1
1,943,022	+		SO1852	0.11	-0.1
1,943,022	+		SO1852	0.11	-0.4
1,943,022	+		SO1852	0.11	-1.2
1,943,085	-		SO1852	0.37	-1.8
1,943,138	-		SO1852	0.59	-1.8
1,943,140	+		SO1852	0.59	-1.0
1,943,148	-		SO1852	0.63	-1.4
1,943,279	+				-0.6
1,943,341	-				+0.3
1,943,348	+				-0.7
1,943,538	-		SO1853	0.15	+0.3
1,943,538	-		SO1853	0.15	+1.5
1,943,538	-		SO1853	0.15	+0.7
1,943,626	+		SO1853	0.20	-0.2
1,943,636	+		SO1853	0.21	+0.4
1,943,705	+		SO1853	0.24	-0.5
1,943,821	+		SO1853	0.30	+0.5
1,943,882	+		SO1853	0.33	+0.4
1,943,937	+		SO1853	0.36	+0.2
1,944,075	-		SO1853	0.43	-0.9
1,944,075	-		SO1853	0.43	-1.1
1,944,158	-		SO1853	0.48	-0.8
1,944,158	-		SO1853	0.48	-0.1