Strain Fitness in Shewanella oneidensis MR-1 around SO1375

Experiment: Vanillin 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vanillin 1 mM
1,430,235	-		SO1373	0.17	+0.6
1,430,235	-		SO1373	0.17	-0.5
1,430,293	+		SO1373	0.33	-0.4
1,430,293	+		SO1373	0.33	-1.9
1,430,302	-		SO1373	0.36	-0.4
1,430,392	+		SO1373	0.61	-1.7
1,430,439	-		SO1373	0.75	+0.2
1,430,498	-				-0.8
1,430,705	-		SO1374	0.34	-0.1
1,430,724	-		SO1374	0.38	+0.8
1,430,785	-		SO1374	0.50	+0.9
1,430,834	+		SO1374	0.59	-1.2
1,430,842	-		SO1374	0.61	+0.9
1,430,937	-		SO1374	0.79	-0.4
1,430,987	+		SO1374	0.89	-0.3
1,430,987	+		SO1374	0.89	+0.3
1,430,987	+		SO1374	0.89	-0.5
1,431,021	-				-0.1
1,431,103	+				-1.4
1,431,151	+				-0.1
1,431,159	-				-0.1
1,431,232	+				-0.8
1,431,232	+				-0.0
1,431,298	+				+0.7
1,431,345	+		SO1375	0.12	+0.6
1,431,345	+		SO1375	0.12	-0.4
1,431,345	+		SO1375	0.12	+2.1
1,431,345	+		SO1375	0.12	+0.5
1,431,373	+		SO1375	0.14	-0.0
1,431,399	+		SO1375	0.15	+0.3
1,431,407	-		SO1375	0.16	-1.0
1,431,442	-		SO1375	0.18	+0.2
1,431,479	+		SO1375	0.21	-1.4
1,431,633	-		SO1375	0.31	-0.1
1,431,654	-		SO1375	0.32	+0.2
1,431,672	-		SO1375	0.34	+0.6
1,431,672	-		SO1375	0.34	-0.6
1,431,685	+		SO1375	0.35	-0.2
1,431,693	-		SO1375	0.35	+0.1
1,431,694	-		SO1375	0.35	-1.1
1,431,793	+		SO1375	0.42	-0.5
1,431,817	+		SO1375	0.43	-0.1
1,431,818	-		SO1375	0.43	-1.0
1,431,894	-		SO1375	0.49	+0.2
1,431,931	+		SO1375	0.51	-0.2
1,432,056	+		SO1375	0.59	-0.8
1,432,064	-		SO1375	0.60	-0.5
1,432,103	+		SO1375	0.63	-0.5
1,432,164	-		SO1375	0.67	-0.4
1,432,180	-		SO1375	0.68	-0.2
1,432,222	+		SO1375	0.70	-0.8
1,432,230	-		SO1375	0.71	+0.7
1,432,230	-		SO1375	0.71	+0.2
1,432,230	-		SO1375	0.71	-1.1
1,432,230	-		SO1375	0.71	+0.1
1,432,277	-		SO1375	0.74	+0.6
1,432,427	-		SO1375	0.84	-1.0
1,432,427	-		SO1375	0.84	-0.9
1,432,427	-		SO1375	0.84	-0.4
1,432,427	-		SO1375	0.84	+0.1
1,432,427	-		SO1375	0.84	-3.5
1,432,427	-		SO1375	0.84	-0.3
1,432,576	-				-0.1
1,432,641	+				-0.0
1,432,756	-				-0.4
1,432,911	-				+0.2
1,432,986	+				-0.3
1,433,003	-				-1.3
1,433,053	-		SO1376	0.14	-0.7
1,433,080	+				+0.6
1,433,081	+		SO1376	0.19	-0.7
1,433,140	-		SO1376	0.28	+0.1
1,433,249	+		SO1376	0.45	-0.5
1,433,292	+		SO1376	0.52	-1.3
1,433,312	+		SO1376	0.55	-0.3
1,433,320	-		SO1376	0.56	-0.2
1,433,434	+		SO1376	0.74	+0.3
1,433,461	-		SO1376	0.78	-0.2
1,433,550	+				-1.1
1,433,550	+				-0.2
1,433,558	-				-0.2
1,433,558	-				-1.2
1,433,558	-				-0.9
1,433,627	+				+0.6