Strain Fitness in Shewanella oneidensis MR-1 around SO1103

Experiment: Vanillin 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vanillin 1 mM
1,145,491	+		SO1102	0.83	+0.2
1,145,498	+		SO1102	0.84	+0.9
1,145,549	-		SO1102	0.86	+0.1
1,145,636	+				+0.5
1,145,636	+				+0.4
1,145,672	-				-0.4
1,145,672	-				+0.6
1,145,716	-				-0.7
1,145,717	-				-1.6
1,145,719	-				-0.2
1,145,719	-				-0.3
1,145,719	-				-1.6
1,145,759	-				+0.5
1,145,766	+				-0.2
1,145,766	+				+0.1
1,145,774	-				-0.0
1,145,798	-				+0.1
1,145,828	+				-0.2
1,145,828	+				+0.0
1,145,887	+				-0.7
1,146,001	+				-0.0
1,146,008	+				+0.1
1,146,010	-				-0.5
1,146,010	-				-0.1
1,146,224	+				-0.4
1,146,273	-				-1.7
1,146,367	+				-0.2
1,146,706	+	nqrA-2	SO1103	0.35	-2.1
1,146,798	+	nqrA-2	SO1103	0.42	-2.1
1,147,050	-	nqrA-2	SO1103	0.61	-1.9
1,147,196	-	nqrA-2	SO1103	0.72	-2.4
1,147,366	+	nqrA-2	SO1103	0.85	-4.8
1,147,458	+				-1.4
1,147,497	-				-2.3
1,147,532	-				-0.7
1,147,766	-	nqrB-2	SO1104	0.16	-2.5
1,147,981	+	nqrB-2	SO1104	0.34	-1.7
1,148,277	-	nqrB-2	SO1104	0.59	-1.0
1,148,282	+	nqrB-2	SO1104	0.59	-2.0
1,148,429	+	nqrB-2	SO1104	0.72	-2.2