Strain Fitness in Shewanella oneidensis MR-1 around SO1101

Experiment: Vanillin 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vanillin 1 mM
1,142,143	-		SO1100	0.25	-0.6
1,142,335	+		SO1100	0.42	-0.3
1,142,459	-		SO1100	0.53	+0.6
1,142,507	-		SO1100	0.58	+0.2
1,142,516	-		SO1100	0.59	+0.2
1,142,530	-		SO1100	0.60	-0.4
1,142,549	-		SO1100	0.62	-0.2
1,142,600	+		SO1100	0.66	-0.4
1,142,618	-		SO1100	0.68	+0.2
1,142,749	-		SO1100	0.80	+0.2
1,142,790	+		SO1100	0.83	-0.5
1,142,791	-		SO1100	0.83	-0.3
1,142,957	+				-2.0
1,143,018	+				-0.0
1,143,026	-				+0.6
1,143,085	+				-0.1
1,143,093	-				+0.6
1,143,093	-				+0.3
1,143,288	-	luxS	SO1101	0.29	-0.2
1,143,326	+	luxS	SO1101	0.36	+0.1
1,143,412	+	luxS	SO1101	0.53	+0.8
1,143,555	+	luxS	SO1101	0.81	+1.0
1,143,555	+	luxS	SO1101	0.81	-1.4
1,143,563	-	luxS	SO1101	0.83	-0.5
1,143,563	-	luxS	SO1101	0.83	+0.4
1,143,591	-	luxS	SO1101	0.88	-0.2
1,143,644	+				-0.2
1,143,644	+				-1.3
1,143,652	-				-0.5
1,143,652	-				-0.0
1,143,654	+				+0.9
1,143,939	+				+0.2
1,143,949	+				+1.1
1,143,957	-				-0.4
1,143,957	-				+0.0
1,144,183	+		SO1102	0.19	+0.6
1,144,264	-		SO1102	0.23	-0.2
1,144,382	+		SO1102	0.29	+0.1
1,144,389	-		SO1102	0.30	+0.6
1,144,395	+		SO1102	0.30	+0.5
1,144,434	+		SO1102	0.32	+1.1
1,144,513	-		SO1102	0.36	+0.2
1,144,520	+		SO1102	0.36	-0.2
1,144,528	-		SO1102	0.36	-0.5
1,144,542	+		SO1102	0.37	-0.7
1,144,615	-		SO1102	0.41	+0.4