Experiment: Vanillin 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt trxC and fkbP-1 are separated by 174 nucleotides fkbP-1 and SO0454 overlap by 4 nucleotides SO0454 and SO0455 are separated by 42 nucleotides SO0455 and SO0456 are separated by 102 nucleotides
SO0452: trxC - thioredoxin 2 (NCBI ptt file), at 478,910 to 479,332
trxC
SO0453: fkbP-1 - peptidyl-prolyl cis-trans isomerase FkbP (NCBI ptt file), at 479,507 to 479,842
fkbP-1
SO0454: SO0454 - conserved hypothetical protein (NCBI ptt file), at 479,839 to 480,261
SO0454
SO0455: SO0455 - hypothetical transporter (NCBI ptt file), at 480,304 to 482,337
SO0455
SO0456: SO0456 - immunogenic-related protein (NCBI ptt file), at 482,440 to 483,396
SO0456
Position (kb) 480
481
482
483 Strain fitness (log2 ratio) -2
-1
0
1
2 at 479.304 kb on + strand at 479.396 kb on + strand at 479.415 kb on - strand at 479.462 kb on - strand at 479.569 kb on + strand, within fkbP-1 at 479.610 kb on - strand, within fkbP-1 at 479.614 kb on + strand, within fkbP-1 at 479.622 kb on - strand, within fkbP-1 at 479.668 kb on - strand, within fkbP-1 at 479.687 kb on + strand, within fkbP-1 at 479.729 kb on + strand, within fkbP-1 at 479.744 kb on + strand, within fkbP-1 at 479.744 kb on + strand, within fkbP-1 at 479.749 kb on + strand, within fkbP-1 at 479.883 kb on - strand, within SO0454 at 479.888 kb on + strand, within SO0454 at 479.921 kb on - strand, within SO0454 at 479.931 kb on + strand, within SO0454 at 479.941 kb on - strand, within SO0454 at 479.981 kb on - strand, within SO0454 at 480.011 kb on + strand, within SO0454 at 480.120 kb on - strand, within SO0454 at 480.130 kb on + strand, within SO0454 at 480.130 kb on + strand, within SO0454 at 480.130 kb on + strand, within SO0454 at 480.130 kb on + strand, within SO0454 at 480.137 kb on + strand, within SO0454 at 480.226 kb on + strand at 480.309 kb on - strand at 480.347 kb on - strand at 480.364 kb on + strand at 480.367 kb on - strand at 480.372 kb on - strand at 480.518 kb on + strand, within SO0455 at 480.526 kb on - strand, within SO0455 at 480.810 kb on + strand, within SO0455 at 480.871 kb on + strand, within SO0455 at 480.903 kb on + strand, within SO0455 at 480.911 kb on - strand, within SO0455 at 480.968 kb on - strand, within SO0455 at 481.015 kb on - strand, within SO0455 at 481.148 kb on - strand, within SO0455 at 481.227 kb on + strand, within SO0455 at 481.235 kb on - strand, within SO0455 at 481.244 kb on + strand, within SO0455 at 481.252 kb on - strand, within SO0455 at 481.554 kb on - strand, within SO0455 at 481.643 kb on - strand, within SO0455 at 481.644 kb on + strand, within SO0455 at 481.701 kb on + strand, within SO0455 at 481.777 kb on - strand, within SO0455 at 481.800 kb on - strand, within SO0455 at 481.822 kb on + strand, within SO0455 at 481.828 kb on - strand, within SO0455 at 481.953 kb on + strand, within SO0455 at 481.990 kb on + strand, within SO0455 at 481.998 kb on - strand, within SO0455 at 482.105 kb on + strand, within SO0455 at 482.119 kb on + strand, within SO0455 at 482.119 kb on + strand, within SO0455 at 482.120 kb on + strand, within SO0455 at 482.127 kb on - strand, within SO0455 at 482.143 kb on - strand at 482.203 kb on + strand at 482.273 kb on + strand at 482.273 kb on + strand at 482.281 kb on - strand at 482.303 kb on - strand at 482.330 kb on - strand at 482.352 kb on + strand at 482.352 kb on + strand at 482.352 kb on + strand at 482.357 kb on + strand at 482.360 kb on - strand at 482.360 kb on - strand at 482.385 kb on - strand at 482.393 kb on + strand at 482.398 kb on + strand at 482.400 kb on - strand at 482.401 kb on - strand at 482.424 kb on + strand at 482.424 kb on + strand at 482.424 kb on + strand at 482.437 kb on + strand at 482.437 kb on + strand at 482.437 kb on + strand at 482.437 kb on + strand at 482.437 kb on + strand at 482.437 kb on + strand at 482.437 kb on + strand at 482.437 kb on + strand at 482.445 kb on - strand at 482.445 kb on - strand at 482.445 kb on - strand at 482.445 kb on - strand at 482.445 kb on - strand at 482.445 kb on - strand at 482.445 kb on - strand at 482.482 kb on - strand at 482.528 kb on + strand at 482.540 kb on + strand, within SO0456 at 482.596 kb on + strand, within SO0456 at 482.766 kb on + strand, within SO0456 at 482.800 kb on + strand, within SO0456 at 482.800 kb on + strand, within SO0456 at 482.808 kb on - strand, within SO0456 at 482.808 kb on - strand, within SO0456 at 482.808 kb on - strand, within SO0456 at 482.808 kb on - strand, within SO0456 at 482.808 kb on - strand, within SO0456 at 482.808 kb on - strand, within SO0456 at 482.808 kb on - strand, within SO0456 at 482.815 kb on + strand, within SO0456 at 482.815 kb on + strand, within SO0456 at 482.815 kb on + strand, within SO0456 at 482.815 kb on + strand, within SO0456 at 482.815 kb on - strand, within SO0456 at 482.823 kb on - strand, within SO0456 at 482.882 kb on + strand, within SO0456 at 482.915 kb on + strand, within SO0456 at 483.007 kb on + strand, within SO0456 at 483.139 kb on + strand, within SO0456 at 483.139 kb on + strand, within SO0456 at 483.141 kb on - strand, within SO0456 at 483.142 kb on - strand, within SO0456 at 483.201 kb on - strand, within SO0456 at 483.224 kb on + strand, within SO0456 at 483.269 kb on + strand, within SO0456 at 483.276 kb on + strand, within SO0456
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 1 mM remove 479,304 + +0.0 479,396 + -0.2 479,415 - -0.6 479,462 - +0.3 479,569 + fkbP-1 SO0453 0.18 +0.4 479,610 - fkbP-1 SO0453 0.31 -0.2 479,614 + fkbP-1 SO0453 0.32 -0.6 479,622 - fkbP-1 SO0453 0.34 +0.2 479,668 - fkbP-1 SO0453 0.48 -0.5 479,687 + fkbP-1 SO0453 0.54 -0.1 479,729 + fkbP-1 SO0453 0.66 +0.3 479,744 + fkbP-1 SO0453 0.71 -0.1 479,744 + fkbP-1 SO0453 0.71 -0.2 479,749 + fkbP-1 SO0453 0.72 -0.8 479,883 - SO0454 0.10 +0.9 479,888 + SO0454 0.12 +0.1 479,921 - SO0454 0.19 +0.4 479,931 + SO0454 0.22 +0.5 479,941 - SO0454 0.24 -0.9 479,981 - SO0454 0.34 +0.8 480,011 + SO0454 0.41 -0.1 480,120 - SO0454 0.66 +0.4 480,130 + SO0454 0.69 +1.1 480,130 + SO0454 0.69 +0.5 480,130 + SO0454 0.69 +0.6 480,130 + SO0454 0.69 +0.0 480,137 + SO0454 0.70 -0.0 480,226 + +0.4 480,309 - +1.4 480,347 - +1.0 480,364 + +0.2 480,367 - +0.8 480,372 - -0.3 480,518 + SO0455 0.11 +0.4 480,526 - SO0455 0.11 +0.1 480,810 + SO0455 0.25 -0.2 480,871 + SO0455 0.28 +0.1 480,903 + SO0455 0.29 +0.5 480,911 - SO0455 0.30 +0.5 480,968 - SO0455 0.33 -0.1 481,015 - SO0455 0.35 +0.6 481,148 - SO0455 0.41 -0.6 481,227 + SO0455 0.45 +0.8 481,235 - SO0455 0.46 +0.5 481,244 + SO0455 0.46 +0.8 481,252 - SO0455 0.47 +0.3 481,554 - SO0455 0.61 -0.6 481,643 - SO0455 0.66 +0.2 481,644 + SO0455 0.66 +0.7 481,701 + SO0455 0.69 +0.9 481,777 - SO0455 0.72 -0.0 481,800 - SO0455 0.74 +1.1 481,822 + SO0455 0.75 +2.3 481,828 - SO0455 0.75 -0.2 481,953 + SO0455 0.81 -1.3 481,990 + SO0455 0.83 +1.8 481,998 - SO0455 0.83 +0.4 482,105 + SO0455 0.89 +0.3 482,119 + SO0455 0.89 -0.9 482,119 + SO0455 0.89 -0.5 482,120 + SO0455 0.89 +0.5 482,127 - SO0455 0.90 -0.1 482,143 - +0.6 482,203 + +0.4 482,273 + +1.0 482,273 + +0.7 482,281 - -1.8 482,303 - +0.4 482,330 - -0.5 482,352 + -1.3 482,352 + -0.0 482,352 + -0.4 482,357 + -0.2 482,360 - +0.1 482,360 - +1.4 482,385 - -0.6 482,393 + +0.2 482,398 + -0.2 482,400 - +0.2 482,401 - +1.2 482,424 + +0.8 482,424 + +0.2 482,424 + -0.4 482,437 + +0.3 482,437 + -0.7 482,437 + +0.8 482,437 + +0.3 482,437 + +0.1 482,437 + +0.3 482,437 + +0.5 482,437 + +0.1 482,445 - +0.1 482,445 - -0.3 482,445 - +1.6 482,445 - -0.3 482,445 - -1.3 482,445 - +0.1 482,445 - +0.9 482,482 - +0.6 482,528 + +0.5 482,540 + SO0456 0.10 -0.6 482,596 + SO0456 0.16 +1.1 482,766 + SO0456 0.34 +0.2 482,800 + SO0456 0.38 -0.1 482,800 + SO0456 0.38 +1.1 482,808 - SO0456 0.38 +0.0 482,808 - SO0456 0.38 +0.2 482,808 - SO0456 0.38 +0.2 482,808 - SO0456 0.38 -0.0 482,808 - SO0456 0.38 +0.5 482,808 - SO0456 0.38 +0.2 482,808 - SO0456 0.38 +0.5 482,815 + SO0456 0.39 -0.1 482,815 + SO0456 0.39 -1.3 482,815 + SO0456 0.39 +0.3 482,815 + SO0456 0.39 +0.4 482,815 - SO0456 0.39 +1.9 482,823 - SO0456 0.40 +1.0 482,882 + SO0456 0.46 -0.3 482,915 + SO0456 0.50 +0.4 483,007 + SO0456 0.59 -0.1 483,139 + SO0456 0.73 -0.1 483,139 + SO0456 0.73 +0.3 483,141 - SO0456 0.73 +0.6 483,142 - SO0456 0.73 -0.3 483,201 - SO0456 0.80 -1.1 483,224 + SO0456 0.82 -0.1 483,269 + SO0456 0.87 +0.3 483,276 + SO0456 0.87 +0.3
Or see this region's nucleotide sequence