Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_889 and HP15_890 are separated by 19 nucleotides HP15_890 and HP15_891 overlap by 4 nucleotides HP15_891 and HP15_892 are separated by 8 nucleotides HP15_892 and HP15_893 are separated by 148 nucleotides
HP15_889: HP15_889 - cobalamin synthesis protein/P47K family protein, at 903,343 to 904,329
_889
HP15_890: HP15_890 - methyltransferase-related protein, at 904,349 to 904,972
_890
HP15_891: HP15_891 - conserved hypothetical protein, at 904,969 to 905,970
_891
HP15_892: HP15_892 - uncharacterized conserved protein UCP029543, at 905,979 to 906,338
_892
HP15_893: HP15_893 - hypothetical protein, at 906,487 to 907,551
_893
Position (kb) 904
905
906 Strain fitness (log2 ratio) -1
0
1
2 at 904.064 kb on + strand, within HP15_889 at 904.146 kb on + strand, within HP15_889 at 904.154 kb on - strand, within HP15_889 at 904.204 kb on + strand, within HP15_889 at 904.207 kb on - strand, within HP15_889 at 904.242 kb on - strand at 904.468 kb on - strand, within HP15_890 at 904.610 kb on - strand, within HP15_890 at 904.610 kb on - strand, within HP15_890 at 904.828 kb on - strand, within HP15_890 at 904.856 kb on + strand, within HP15_890 at 904.856 kb on + strand, within HP15_890 at 904.864 kb on - strand, within HP15_890 at 904.942 kb on + strand at 904.998 kb on + strand at 905.018 kb on - strand at 905.234 kb on + strand, within HP15_891 at 905.288 kb on + strand, within HP15_891 at 905.290 kb on + strand, within HP15_891 at 905.394 kb on + strand, within HP15_891 at 905.718 kb on + strand, within HP15_891 at 905.745 kb on + strand, within HP15_891 at 905.780 kb on + strand, within HP15_891 at 905.989 kb on - strand at 906.023 kb on + strand, within HP15_892 at 906.029 kb on - strand, within HP15_892 at 906.082 kb on - strand, within HP15_892 at 906.169 kb on - strand, within HP15_892 at 906.335 kb on - strand at 906.526 kb on + strand at 906.528 kb on + strand at 906.564 kb on - strand at 906.574 kb on - strand at 906.648 kb on + strand, within HP15_893 at 906.665 kb on + strand, within HP15_893 at 906.665 kb on + strand, within HP15_893 at 906.670 kb on + strand, within HP15_893 at 906.756 kb on + strand, within HP15_893 at 906.764 kb on - strand, within HP15_893 at 906.783 kb on + strand, within HP15_893 at 906.783 kb on + strand, within HP15_893 at 906.786 kb on - strand, within HP15_893 at 906.789 kb on + strand, within HP15_893
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 904,064 + HP15_889 0.73 +0.1 904,146 + HP15_889 0.81 -0.3 904,154 - HP15_889 0.82 -0.3 904,204 + HP15_889 0.87 +0.4 904,207 - HP15_889 0.88 -0.4 904,242 - -0.3 904,468 - HP15_890 0.19 +1.2 904,610 - HP15_890 0.42 +0.5 904,610 - HP15_890 0.42 +1.2 904,828 - HP15_890 0.77 +1.5 904,856 + HP15_890 0.81 -0.4 904,856 + HP15_890 0.81 -0.7 904,864 - HP15_890 0.83 -0.8 904,942 + +2.1 904,998 + -0.1 905,018 - -0.1 905,234 + HP15_891 0.26 +1.6 905,288 + HP15_891 0.32 +1.7 905,290 + HP15_891 0.32 -0.1 905,394 + HP15_891 0.42 +0.2 905,718 + HP15_891 0.75 -0.2 905,745 + HP15_891 0.77 +1.3 905,780 + HP15_891 0.81 +2.0 905,989 - -0.4 906,023 + HP15_892 0.12 +2.4 906,029 - HP15_892 0.14 -0.6 906,082 - HP15_892 0.29 -1.3 906,169 - HP15_892 0.53 -0.5 906,335 - +0.3 906,526 + -0.9 906,528 + +1.4 906,564 - +1.3 906,574 - -0.5 906,648 + HP15_893 0.15 -1.0 906,665 + HP15_893 0.17 -1.4 906,665 + HP15_893 0.17 -0.4 906,670 + HP15_893 0.17 +1.5 906,756 + HP15_893 0.25 +0.1 906,764 - HP15_893 0.26 +1.4 906,783 + HP15_893 0.28 +0.1 906,783 + HP15_893 0.28 -0.4 906,786 - HP15_893 0.28 -1.1 906,789 + HP15_893 0.28 -0.2
Or see this region's nucleotide sequence