Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08750 and PGA1_c08755 are separated by 81 nucleotides PGA1_c08755 and PGA1_c08760 overlap by 1 nucleotides
PGA1_c08750: PGA1_c08750 - sarcosine oxidase subunit beta, at 901,787 to 903,040
_c08750
PGA1_c08755: PGA1_c08755 - sarcosine oxidase subunit delta, at 903,122 to 903,382
_c08755
PGA1_c08760: PGA1_c08760 - sarcosine oxidase subunit alpha, at 903,382 to 906,303
_c08760
Position (kb) 903
904 Strain fitness (log2 ratio) -1
0
1 at 902.154 kb on + strand, within PGA1_c08750 at 902.164 kb on + strand, within PGA1_c08750 at 902.170 kb on - strand, within PGA1_c08750 at 902.172 kb on - strand, within PGA1_c08750 at 902.232 kb on + strand, within PGA1_c08750 at 902.260 kb on - strand, within PGA1_c08750 at 902.308 kb on + strand, within PGA1_c08750 at 902.308 kb on - strand, within PGA1_c08750 at 902.343 kb on + strand, within PGA1_c08750 at 902.361 kb on + strand, within PGA1_c08750 at 902.361 kb on + strand, within PGA1_c08750 at 902.376 kb on + strand, within PGA1_c08750 at 902.394 kb on + strand, within PGA1_c08750 at 902.440 kb on - strand, within PGA1_c08750 at 902.456 kb on + strand, within PGA1_c08750 at 902.456 kb on + strand, within PGA1_c08750 at 902.464 kb on - strand, within PGA1_c08750 at 902.464 kb on - strand, within PGA1_c08750 at 902.464 kb on - strand, within PGA1_c08750 at 902.464 kb on - strand, within PGA1_c08750 at 902.464 kb on - strand, within PGA1_c08750 at 902.464 kb on - strand, within PGA1_c08750 at 902.508 kb on - strand, within PGA1_c08750 at 902.525 kb on + strand, within PGA1_c08750 at 902.525 kb on + strand, within PGA1_c08750 at 902.533 kb on - strand, within PGA1_c08750 at 902.540 kb on + strand, within PGA1_c08750 at 902.577 kb on + strand, within PGA1_c08750 at 902.585 kb on - strand, within PGA1_c08750 at 902.645 kb on - strand, within PGA1_c08750 at 902.670 kb on + strand, within PGA1_c08750 at 902.670 kb on + strand, within PGA1_c08750 at 902.704 kb on - strand, within PGA1_c08750 at 902.856 kb on + strand, within PGA1_c08750 at 902.859 kb on - strand, within PGA1_c08750 at 902.909 kb on - strand, within PGA1_c08750 at 902.911 kb on + strand, within PGA1_c08750 at 902.911 kb on + strand, within PGA1_c08750 at 902.943 kb on - strand at 903.010 kb on + strand at 903.025 kb on + strand at 903.039 kb on + strand at 903.039 kb on + strand at 903.039 kb on + strand at 903.073 kb on + strand at 903.104 kb on + strand at 903.104 kb on + strand at 903.112 kb on - strand at 903.120 kb on - strand at 903.127 kb on - strand at 903.141 kb on + strand at 903.213 kb on + strand, within PGA1_c08755 at 903.213 kb on + strand, within PGA1_c08755 at 903.213 kb on + strand, within PGA1_c08755 at 903.213 kb on + strand, within PGA1_c08755 at 903.213 kb on + strand, within PGA1_c08755 at 903.213 kb on + strand, within PGA1_c08755 at 903.213 kb on + strand, within PGA1_c08755 at 903.213 kb on + strand, within PGA1_c08755 at 903.213 kb on + strand, within PGA1_c08755 at 903.213 kb on + strand, within PGA1_c08755 at 903.221 kb on - strand, within PGA1_c08755 at 903.221 kb on - strand, within PGA1_c08755 at 903.221 kb on - strand, within PGA1_c08755 at 903.221 kb on - strand, within PGA1_c08755 at 903.221 kb on - strand, within PGA1_c08755 at 903.247 kb on + strand, within PGA1_c08755 at 903.301 kb on - strand, within PGA1_c08755 at 903.595 kb on - strand at 903.619 kb on - strand at 903.624 kb on + strand at 903.632 kb on - strand at 903.697 kb on - strand, within PGA1_c08760 at 903.703 kb on + strand, within PGA1_c08760 at 903.754 kb on + strand, within PGA1_c08760 at 903.762 kb on - strand, within PGA1_c08760 at 903.762 kb on - strand, within PGA1_c08760 at 903.764 kb on + strand, within PGA1_c08760 at 903.772 kb on - strand, within PGA1_c08760 at 903.873 kb on - strand, within PGA1_c08760 at 903.873 kb on - strand, within PGA1_c08760 at 903.920 kb on - strand, within PGA1_c08760 at 903.952 kb on + strand, within PGA1_c08760 at 903.957 kb on - strand, within PGA1_c08760 at 904.000 kb on + strand, within PGA1_c08760 at 904.040 kb on - strand, within PGA1_c08760 at 904.057 kb on + strand, within PGA1_c08760 at 904.057 kb on + strand, within PGA1_c08760 at 904.057 kb on + strand, within PGA1_c08760 at 904.057 kb on + strand, within PGA1_c08760 at 904.065 kb on - strand, within PGA1_c08760 at 904.098 kb on - strand, within PGA1_c08760 at 904.189 kb on - strand, within PGA1_c08760 at 904.226 kb on + strand, within PGA1_c08760 at 904.274 kb on + strand, within PGA1_c08760 at 904.278 kb on + strand, within PGA1_c08760 at 904.278 kb on + strand, within PGA1_c08760 at 904.278 kb on + strand, within PGA1_c08760 at 904.278 kb on + strand, within PGA1_c08760 at 904.286 kb on - strand, within PGA1_c08760 at 904.286 kb on - strand, within PGA1_c08760 at 904.339 kb on - strand, within PGA1_c08760 at 904.341 kb on - strand, within PGA1_c08760
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 902,154 + PGA1_c08750 0.29 +0.4 902,164 + PGA1_c08750 0.30 -0.8 902,170 - PGA1_c08750 0.31 +0.5 902,172 - PGA1_c08750 0.31 +0.7 902,232 + PGA1_c08750 0.35 +1.6 902,260 - PGA1_c08750 0.38 +0.3 902,308 + PGA1_c08750 0.42 +0.3 902,308 - PGA1_c08750 0.42 -0.2 902,343 + PGA1_c08750 0.44 -0.2 902,361 + PGA1_c08750 0.46 +0.5 902,361 + PGA1_c08750 0.46 +0.9 902,376 + PGA1_c08750 0.47 -0.9 902,394 + PGA1_c08750 0.48 -0.2 902,440 - PGA1_c08750 0.52 +0.1 902,456 + PGA1_c08750 0.53 -1.6 902,456 + PGA1_c08750 0.53 +0.2 902,464 - PGA1_c08750 0.54 -0.3 902,464 - PGA1_c08750 0.54 +0.4 902,464 - PGA1_c08750 0.54 +0.3 902,464 - PGA1_c08750 0.54 +0.3 902,464 - PGA1_c08750 0.54 +1.1 902,464 - PGA1_c08750 0.54 -0.1 902,508 - PGA1_c08750 0.57 +0.3 902,525 + PGA1_c08750 0.59 -0.1 902,525 + PGA1_c08750 0.59 -0.2 902,533 - PGA1_c08750 0.59 +0.3 902,540 + PGA1_c08750 0.60 +1.2 902,577 + PGA1_c08750 0.63 -0.5 902,585 - PGA1_c08750 0.64 +0.6 902,645 - PGA1_c08750 0.68 +0.8 902,670 + PGA1_c08750 0.70 -0.1 902,670 + PGA1_c08750 0.70 -0.5 902,704 - PGA1_c08750 0.73 +0.1 902,856 + PGA1_c08750 0.85 -0.0 902,859 - PGA1_c08750 0.85 -0.4 902,909 - PGA1_c08750 0.89 -0.0 902,911 + PGA1_c08750 0.90 +0.3 902,911 + PGA1_c08750 0.90 +1.2 902,943 - -0.2 903,010 + +0.7 903,025 + -0.7 903,039 + -0.5 903,039 + +0.4 903,039 + +0.6 903,073 + +0.5 903,104 + +0.8 903,104 + +0.7 903,112 - -0.3 903,120 - -1.0 903,127 - +1.0 903,141 + -0.1 903,213 + PGA1_c08755 0.35 -0.6 903,213 + PGA1_c08755 0.35 -0.5 903,213 + PGA1_c08755 0.35 +0.4 903,213 + PGA1_c08755 0.35 -0.4 903,213 + PGA1_c08755 0.35 -0.1 903,213 + PGA1_c08755 0.35 -0.4 903,213 + PGA1_c08755 0.35 -0.7 903,213 + PGA1_c08755 0.35 -1.5 903,213 + PGA1_c08755 0.35 +0.2 903,213 + PGA1_c08755 0.35 -0.1 903,221 - PGA1_c08755 0.38 -0.3 903,221 - PGA1_c08755 0.38 +0.6 903,221 - PGA1_c08755 0.38 +0.7 903,221 - PGA1_c08755 0.38 +0.7 903,221 - PGA1_c08755 0.38 -0.2 903,247 + PGA1_c08755 0.48 -1.0 903,301 - PGA1_c08755 0.69 -0.2 903,595 - +0.7 903,619 - +0.4 903,624 + -0.1 903,632 - -0.5 903,697 - PGA1_c08760 0.11 +0.1 903,703 + PGA1_c08760 0.11 -0.4 903,754 + PGA1_c08760 0.13 +0.4 903,762 - PGA1_c08760 0.13 -0.7 903,762 - PGA1_c08760 0.13 -0.2 903,764 + PGA1_c08760 0.13 -0.6 903,772 - PGA1_c08760 0.13 -0.2 903,873 - PGA1_c08760 0.17 -0.9 903,873 - PGA1_c08760 0.17 -0.1 903,920 - PGA1_c08760 0.18 -0.5 903,952 + PGA1_c08760 0.20 -0.4 903,957 - PGA1_c08760 0.20 +0.7 904,000 + PGA1_c08760 0.21 +0.8 904,040 - PGA1_c08760 0.23 +1.3 904,057 + PGA1_c08760 0.23 +0.3 904,057 + PGA1_c08760 0.23 +0.4 904,057 + PGA1_c08760 0.23 +0.9 904,057 + PGA1_c08760 0.23 -1.1 904,065 - PGA1_c08760 0.23 +0.5 904,098 - PGA1_c08760 0.25 +0.1 904,189 - PGA1_c08760 0.28 -0.4 904,226 + PGA1_c08760 0.29 -0.5 904,274 + PGA1_c08760 0.31 -0.9 904,278 + PGA1_c08760 0.31 +0.4 904,278 + PGA1_c08760 0.31 +0.3 904,278 + PGA1_c08760 0.31 +0.7 904,278 + PGA1_c08760 0.31 +0.4 904,286 - PGA1_c08760 0.31 -0.0 904,286 - PGA1_c08760 0.31 -0.1 904,339 - PGA1_c08760 0.33 +1.0 904,341 - PGA1_c08760 0.33 -1.0
Or see this region's nucleotide sequence