Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c08670

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c08650 and PGA1_c08660 are separated by 172 nucleotidesPGA1_c08660 and PGA1_c08670 are separated by 97 nucleotidesPGA1_c08670 and PGA1_c08680 are separated by 79 nucleotides PGA1_c08650: PGA1_c08650 - homoserine dehydrogenase Hom, at 892,532 to 893,818 _c08650 PGA1_c08660: PGA1_c08660 - hypothetical protein, at 893,991 to 894,320 _c08660 PGA1_c08670: PGA1_c08670 - transcriptional regulator, TetR family, at 894,418 to 895,035 _c08670 PGA1_c08680: PGA1_c08680 - pirin-like protein, at 895,115 to 896,026 _c08680 Position (kb) 894 895 896Strain fitness (log2 ratio) -3 -2 -1 0 1at 893.911 kb on + strandat 893.911 kb on + strandat 893.968 kb on - strandat 893.976 kb on + strandat 893.994 kb on + strandat 893.994 kb on + strandat 894.002 kb on - strandat 894.002 kb on - strandat 894.002 kb on - strandat 894.017 kb on - strandat 894.055 kb on - strand, within PGA1_c08660at 894.055 kb on - strand, within PGA1_c08660at 894.083 kb on - strand, within PGA1_c08660at 894.083 kb on - strand, within PGA1_c08660at 894.098 kb on + strand, within PGA1_c08660at 894.120 kb on + strand, within PGA1_c08660at 894.128 kb on - strand, within PGA1_c08660at 894.128 kb on - strand, within PGA1_c08660at 894.295 kb on + strandat 894.295 kb on + strandat 894.295 kb on + strandat 894.295 kb on + strandat 894.295 kb on + strandat 894.295 kb on + strandat 894.295 kb on + strandat 894.295 kb on + strandat 894.295 kb on + strandat 894.295 kb on + strandat 894.303 kb on - strandat 894.303 kb on - strandat 894.303 kb on - strandat 894.303 kb on - strandat 894.303 kb on - strandat 894.303 kb on - strandat 894.303 kb on - strandat 894.303 kb on - strandat 894.303 kb on - strandat 894.303 kb on - strandat 894.303 kb on - strandat 894.313 kb on - strandat 894.339 kb on + strandat 894.347 kb on - strandat 894.347 kb on - strandat 894.347 kb on - strandat 894.417 kb on + strandat 894.426 kb on + strandat 894.511 kb on + strand, within PGA1_c08670at 894.559 kb on + strand, within PGA1_c08670at 894.561 kb on + strand, within PGA1_c08670at 894.567 kb on + strand, within PGA1_c08670at 894.602 kb on - strand, within PGA1_c08670at 894.603 kb on + strand, within PGA1_c08670at 894.653 kb on + strand, within PGA1_c08670at 894.653 kb on + strand, within PGA1_c08670at 894.658 kb on + strand, within PGA1_c08670at 894.712 kb on + strand, within PGA1_c08670at 894.713 kb on - strand, within PGA1_c08670at 894.720 kb on - strand, within PGA1_c08670at 894.721 kb on - strand, within PGA1_c08670at 894.869 kb on + strand, within PGA1_c08670at 894.877 kb on - strand, within PGA1_c08670at 895.082 kb on - strandat 895.084 kb on - strandat 895.112 kb on + strandat 895.184 kb on - strandat 895.241 kb on - strand, within PGA1_c08680at 895.249 kb on + strand, within PGA1_c08680at 895.257 kb on - strand, within PGA1_c08680at 895.266 kb on - strand, within PGA1_c08680at 895.358 kb on + strand, within PGA1_c08680at 895.359 kb on + strand, within PGA1_c08680at 895.370 kb on - strand, within PGA1_c08680at 895.567 kb on + strand, within PGA1_c08680at 895.571 kb on + strand, within PGA1_c08680at 895.619 kb on - strand, within PGA1_c08680at 895.662 kb on + strand, within PGA1_c08680at 895.669 kb on + strand, within PGA1_c08680at 895.670 kb on - strand, within PGA1_c08680at 895.670 kb on - strand, within PGA1_c08680at 895.682 kb on + strand, within PGA1_c08680at 895.748 kb on - strand, within PGA1_c08680at 895.798 kb on + strand, within PGA1_c08680at 895.801 kb on + strand, within PGA1_c08680at 895.809 kb on - strand, within PGA1_c08680at 895.814 kb on - strand, within PGA1_c08680at 896.034 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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893,911 + -0.9
893,911 + -0.3
893,968 - +0.3
893,976 + +0.1
893,994 + +0.4
893,994 + +0.6
894,002 - -0.4
894,002 - +1.3
894,002 - +0.4
894,017 - +0.3
894,055 - PGA1_c08660 0.19 +0.8
894,055 - PGA1_c08660 0.19 +0.3
894,083 - PGA1_c08660 0.28 -0.2
894,083 - PGA1_c08660 0.28 -0.5
894,098 + PGA1_c08660 0.32 -0.6
894,120 + PGA1_c08660 0.39 +0.5
894,128 - PGA1_c08660 0.42 -0.2
894,128 - PGA1_c08660 0.42 -1.1
894,295 + +0.4
894,295 + -0.8
894,295 + -0.8
894,295 + -0.3
894,295 + +0.3
894,295 + +0.7
894,295 + -0.9
894,295 + +0.3
894,295 + +0.1
894,295 + -0.6
894,303 - +0.3
894,303 - -0.2
894,303 - +0.6
894,303 - -0.3
894,303 - +0.2
894,303 - +0.3
894,303 - -0.0
894,303 - +0.6
894,303 - +0.1
894,303 - +0.1
894,303 - +0.8
894,313 - +0.2
894,339 + -1.7
894,347 - +0.9
894,347 - -0.6
894,347 - -0.5
894,417 + -0.2
894,426 + -0.8
894,511 + PGA1_c08670 0.15 -0.6
894,559 + PGA1_c08670 0.23 -0.1
894,561 + PGA1_c08670 0.23 -0.7
894,567 + PGA1_c08670 0.24 -2.3
894,602 - PGA1_c08670 0.30 -1.7
894,603 + PGA1_c08670 0.30 -1.4
894,653 + PGA1_c08670 0.38 -1.7
894,653 + PGA1_c08670 0.38 -1.4
894,658 + PGA1_c08670 0.39 -1.5
894,712 + PGA1_c08670 0.48 -0.3
894,713 - PGA1_c08670 0.48 -1.4
894,720 - PGA1_c08670 0.49 -0.5
894,721 - PGA1_c08670 0.49 -2.9
894,869 + PGA1_c08670 0.73 -1.0
894,877 - PGA1_c08670 0.74 -1.8
895,082 - -0.1
895,084 - +1.5
895,112 + +0.4
895,184 - +0.2
895,241 - PGA1_c08680 0.14 +0.2
895,249 + PGA1_c08680 0.15 -0.1
895,257 - PGA1_c08680 0.16 -0.3
895,266 - PGA1_c08680 0.17 +0.0
895,358 + PGA1_c08680 0.27 +0.8
895,359 + PGA1_c08680 0.27 -0.3
895,370 - PGA1_c08680 0.28 -0.5
895,567 + PGA1_c08680 0.50 -0.0
895,571 + PGA1_c08680 0.50 -1.1
895,619 - PGA1_c08680 0.55 +0.6
895,662 + PGA1_c08680 0.60 +0.3
895,669 + PGA1_c08680 0.61 -0.3
895,670 - PGA1_c08680 0.61 -0.1
895,670 - PGA1_c08680 0.61 -1.4
895,682 + PGA1_c08680 0.62 +0.4
895,748 - PGA1_c08680 0.69 +0.9
895,798 + PGA1_c08680 0.75 +0.4
895,801 + PGA1_c08680 0.75 +0.3
895,809 - PGA1_c08680 0.76 -0.7
895,814 - PGA1_c08680 0.77 +0.5
896,034 - -1.6

Or see this region's nucleotide sequence