Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_817 and HP15_818 are separated by 256 nucleotides HP15_818 and HP15_819 are separated by 41 nucleotides HP15_819 and HP15_820 are separated by 3 nucleotides
HP15_817: HP15_817 - 3-isopropylmalate dehydrogenase, at 835,335 to 836,489
_817
HP15_818: HP15_818 - protein containing diguanylate phosphodiesterase, predicted domains, at 836,746 to 837,453
_818
HP15_819: HP15_819 - conserved hypothetical protein, membrane, at 837,495 to 837,839
_819
HP15_820: HP15_820 - transcriptional regulator, LysR family protein, at 837,843 to 838,736
_820
Position (kb) 836
837
838 Strain fitness (log2 ratio) -1
0
1 at 835.846 kb on + strand, within HP15_817 at 836.174 kb on - strand, within HP15_817 at 836.266 kb on + strand, within HP15_817 at 836.305 kb on - strand, within HP15_817 at 836.405 kb on - strand at 836.459 kb on + strand at 836.467 kb on - strand at 836.493 kb on + strand at 836.808 kb on + strand at 836.943 kb on - strand, within HP15_818 at 836.992 kb on + strand, within HP15_818 at 836.993 kb on - strand, within HP15_818 at 837.030 kb on + strand, within HP15_818 at 837.090 kb on - strand, within HP15_818 at 837.136 kb on - strand, within HP15_818 at 837.209 kb on - strand, within HP15_818 at 837.243 kb on - strand, within HP15_818 at 837.321 kb on + strand, within HP15_818 at 837.393 kb on + strand at 837.481 kb on - strand at 837.654 kb on - strand, within HP15_819 at 837.853 kb on + strand at 837.966 kb on - strand, within HP15_820 at 838.088 kb on - strand, within HP15_820 at 838.103 kb on + strand, within HP15_820 at 838.237 kb on + strand, within HP15_820
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 835,846 + HP15_817 0.44 -0.9 836,174 - HP15_817 0.73 -0.1 836,266 + HP15_817 0.81 +0.5 836,305 - HP15_817 0.84 +1.5 836,405 - +1.4 836,459 + -0.3 836,467 - -0.2 836,493 + -0.2 836,808 + -1.2 836,943 - HP15_818 0.28 -0.2 836,992 + HP15_818 0.35 -0.2 836,993 - HP15_818 0.35 -0.6 837,030 + HP15_818 0.40 -0.2 837,090 - HP15_818 0.49 +0.1 837,136 - HP15_818 0.55 -0.5 837,209 - HP15_818 0.65 +1.3 837,243 - HP15_818 0.70 +0.0 837,321 + HP15_818 0.81 +0.6 837,393 + +0.8 837,481 - +0.2 837,654 - HP15_819 0.46 +0.5 837,853 + +0.1 837,966 - HP15_820 0.14 -1.4 838,088 - HP15_820 0.27 -0.7 838,103 + HP15_820 0.29 +0.2 838,237 + HP15_820 0.44 -0.3
Or see this region's nucleotide sequence