Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c06310

Experiment: D-Fructose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c06290 and PGA1_c06300 are separated by 118 nucleotidesPGA1_c06300 and PGA1_c06310 are separated by 4 nucleotidesPGA1_c06310 and PGA1_c06320 overlap by 4 nucleotides PGA1_c06290: PGA1_c06290 - cytochrome c oxidase subunit 3, at 643,763 to 644,578 _c06290 PGA1_c06300: PGA1_c06300 - Uncharacterized conserved protein, at 644,697 to 645,371 _c06300 PGA1_c06310: PGA1_c06310 - threonine synthase ThrC, at 645,376 to 646,764 _c06310 PGA1_c06320: PGA1_c06320 - peptidase, M16 family, at 646,761 to 648,023 _c06320 Position (kb) 645 646 647Strain fitness (log2 ratio) -2 -1 0 1at 644.593 kb on - strandat 644.598 kb on + strandat 644.605 kb on + strandat 644.606 kb on - strandat 644.655 kb on + strandat 644.655 kb on + strandat 646.799 kb on - strandat 646.823 kb on + strandat 647.029 kb on + strand, within PGA1_c06320at 647.133 kb on - strand, within PGA1_c06320at 647.279 kb on - strand, within PGA1_c06320at 647.282 kb on + strand, within PGA1_c06320at 647.383 kb on - strand, within PGA1_c06320at 647.426 kb on + strand, within PGA1_c06320at 647.521 kb on - strand, within PGA1_c06320at 647.521 kb on - strand, within PGA1_c06320at 647.541 kb on + strand, within PGA1_c06320at 647.600 kb on + strand, within PGA1_c06320at 647.600 kb on + strand, within PGA1_c06320at 647.608 kb on - strand, within PGA1_c06320at 647.621 kb on + strand, within PGA1_c06320at 647.624 kb on - strand, within PGA1_c06320at 647.630 kb on - strand, within PGA1_c06320at 647.659 kb on + strand, within PGA1_c06320

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
remove
644,593 - -0.3
644,598 + +1.4
644,605 + -0.5
644,606 - -0.2
644,655 + -0.1
644,655 + -0.8
646,799 - -0.4
646,823 + +0.1
647,029 + PGA1_c06320 0.21 +0.3
647,133 - PGA1_c06320 0.29 +0.6
647,279 - PGA1_c06320 0.41 -0.1
647,282 + PGA1_c06320 0.41 +0.2
647,383 - PGA1_c06320 0.49 -0.8
647,426 + PGA1_c06320 0.53 -2.5
647,521 - PGA1_c06320 0.60 -2.2
647,521 - PGA1_c06320 0.60 -0.1
647,541 + PGA1_c06320 0.62 -0.4
647,600 + PGA1_c06320 0.66 -0.3
647,600 + PGA1_c06320 0.66 -0.6
647,608 - PGA1_c06320 0.67 +0.2
647,621 + PGA1_c06320 0.68 -2.1
647,624 - PGA1_c06320 0.68 -0.3
647,630 - PGA1_c06320 0.69 +0.3
647,659 + PGA1_c06320 0.71 -0.2

Or see this region's nucleotide sequence