Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g152 and HP15_p187g153 are separated by 553 nucleotides HP15_p187g153 and HP15_p187g154 are separated by 209 nucleotides HP15_p187g154 and HP15_p187g155 are separated by 104 nucleotides
HP15_p187g152: HP15_p187g152 - hypothetical protein, at 153,407 to 154,279
_p187g152
HP15_p187g153: HP15_p187g153 - hypothetical protein, at 154,833 to 155,483
_p187g153
HP15_p187g154: HP15_p187g154 - hypothetical protein, at 155,693 to 155,833
_p187g154
HP15_p187g155: HP15_p187g155 - amidohydrolase, at 155,938 to 157,410
_p187g155
Position (kb) 154
155
156 Strain fitness (log2 ratio) -2
-1
0
1
2 at 153.876 kb on + strand, within HP15_p187g152 at 153.926 kb on + strand, within HP15_p187g152 at 153.983 kb on + strand, within HP15_p187g152 at 153.986 kb on - strand, within HP15_p187g152 at 153.991 kb on + strand, within HP15_p187g152 at 153.991 kb on + strand, within HP15_p187g152 at 153.991 kb on - strand, within HP15_p187g152 at 153.991 kb on - strand, within HP15_p187g152 at 153.991 kb on - strand, within HP15_p187g152 at 153.999 kb on - strand, within HP15_p187g152 at 153.999 kb on - strand, within HP15_p187g152 at 154.009 kb on + strand, within HP15_p187g152 at 154.090 kb on + strand, within HP15_p187g152 at 154.095 kb on + strand, within HP15_p187g152 at 154.098 kb on - strand, within HP15_p187g152 at 154.103 kb on - strand, within HP15_p187g152 at 154.110 kb on - strand, within HP15_p187g152 at 154.124 kb on + strand, within HP15_p187g152 at 154.124 kb on + strand, within HP15_p187g152 at 154.132 kb on - strand, within HP15_p187g152 at 154.137 kb on - strand, within HP15_p187g152 at 154.156 kb on + strand, within HP15_p187g152 at 154.156 kb on - strand, within HP15_p187g152 at 154.163 kb on + strand, within HP15_p187g152 at 154.195 kb on + strand at 154.240 kb on - strand at 154.267 kb on + strand at 154.349 kb on + strand at 154.357 kb on - strand at 154.357 kb on - strand at 154.440 kb on + strand at 154.440 kb on + strand at 154.440 kb on + strand at 154.446 kb on - strand at 154.450 kb on + strand at 154.450 kb on - strand at 154.453 kb on - strand at 154.513 kb on + strand at 154.514 kb on - strand at 154.514 kb on - strand at 154.514 kb on - strand at 154.533 kb on - strand at 154.540 kb on + strand at 154.558 kb on + strand at 154.604 kb on - strand at 154.668 kb on - strand at 154.676 kb on - strand at 154.699 kb on + strand at 154.714 kb on - strand at 154.921 kb on + strand, within HP15_p187g153 at 154.921 kb on + strand, within HP15_p187g153 at 154.929 kb on - strand, within HP15_p187g153 at 154.929 kb on - strand, within HP15_p187g153 at 154.943 kb on + strand, within HP15_p187g153 at 154.943 kb on + strand, within HP15_p187g153 at 154.955 kb on + strand, within HP15_p187g153 at 154.995 kb on - strand, within HP15_p187g153 at 155.065 kb on + strand, within HP15_p187g153 at 155.073 kb on - strand, within HP15_p187g153 at 155.073 kb on - strand, within HP15_p187g153 at 155.122 kb on - strand, within HP15_p187g153 at 155.133 kb on + strand, within HP15_p187g153 at 155.220 kb on - strand, within HP15_p187g153 at 155.269 kb on + strand, within HP15_p187g153 at 155.275 kb on - strand, within HP15_p187g153 at 155.277 kb on - strand, within HP15_p187g153 at 155.339 kb on + strand at 155.339 kb on + strand, within HP15_p187g153 at 155.339 kb on + strand, within HP15_p187g153 at 155.339 kb on + strand, within HP15_p187g153 at 155.347 kb on - strand, within HP15_p187g153 at 155.478 kb on + strand at 155.478 kb on + strand at 155.494 kb on + strand at 155.519 kb on - strand at 155.552 kb on + strand at 155.557 kb on + strand at 155.559 kb on + strand at 155.559 kb on + strand at 155.559 kb on + strand at 155.559 kb on + strand at 155.560 kb on - strand at 155.560 kb on - strand at 155.560 kb on - strand at 155.560 kb on - strand at 155.567 kb on - strand at 155.567 kb on - strand at 155.567 kb on - strand at 155.567 kb on - strand at 155.567 kb on - strand at 155.567 kb on - strand at 155.567 kb on - strand at 155.567 kb on - strand at 155.573 kb on + strand at 155.578 kb on + strand at 155.586 kb on - strand at 155.586 kb on - strand at 155.644 kb on - strand at 155.675 kb on - strand at 155.678 kb on + strand at 155.678 kb on + strand at 155.686 kb on - strand at 155.690 kb on + strand at 155.703 kb on - strand at 155.740 kb on + strand, within HP15_p187g154 at 155.804 kb on + strand, within HP15_p187g154 at 155.804 kb on + strand, within HP15_p187g154 at 155.817 kb on - strand, within HP15_p187g154 at 155.903 kb on - strand at 155.912 kb on + strand at 155.920 kb on + strand at 155.927 kb on + strand at 155.937 kb on + strand at 155.945 kb on - strand at 156.021 kb on + strand at 156.029 kb on - strand at 156.049 kb on - strand at 156.069 kb on + strand at 156.073 kb on - strand at 156.077 kb on - strand at 156.087 kb on + strand, within HP15_p187g155 at 156.105 kb on + strand, within HP15_p187g155 at 156.130 kb on + strand, within HP15_p187g155 at 156.130 kb on + strand, within HP15_p187g155 at 156.182 kb on + strand, within HP15_p187g155 at 156.216 kb on + strand, within HP15_p187g155 at 156.224 kb on - strand, within HP15_p187g155 at 156.226 kb on + strand, within HP15_p187g155 at 156.234 kb on - strand, within HP15_p187g155 at 156.234 kb on - strand, within HP15_p187g155 at 156.239 kb on - strand, within HP15_p187g155 at 156.338 kb on + strand, within HP15_p187g155 at 156.346 kb on - strand, within HP15_p187g155 at 156.380 kb on - strand, within HP15_p187g155 at 156.382 kb on + strand, within HP15_p187g155 at 156.451 kb on + strand, within HP15_p187g155 at 156.451 kb on + strand, within HP15_p187g155 at 156.451 kb on + strand, within HP15_p187g155 at 156.451 kb on + strand, within HP15_p187g155 at 156.462 kb on + strand, within HP15_p187g155 at 156.470 kb on - strand, within HP15_p187g155 at 156.472 kb on + strand, within HP15_p187g155 at 156.482 kb on + strand, within HP15_p187g155 at 156.482 kb on - strand, within HP15_p187g155
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 153,876 + HP15_p187g152 0.54 +1.6 153,926 + HP15_p187g152 0.59 +1.3 153,983 + HP15_p187g152 0.66 -0.5 153,986 - HP15_p187g152 0.66 -0.5 153,991 + HP15_p187g152 0.67 +1.3 153,991 + HP15_p187g152 0.67 -1.4 153,991 - HP15_p187g152 0.67 +2.1 153,991 - HP15_p187g152 0.67 +0.5 153,991 - HP15_p187g152 0.67 +1.2 153,999 - HP15_p187g152 0.68 +1.4 153,999 - HP15_p187g152 0.68 +1.5 154,009 + HP15_p187g152 0.69 +0.4 154,090 + HP15_p187g152 0.78 +1.1 154,095 + HP15_p187g152 0.79 +0.1 154,098 - HP15_p187g152 0.79 -1.8 154,103 - HP15_p187g152 0.80 -0.3 154,110 - HP15_p187g152 0.81 +1.2 154,124 + HP15_p187g152 0.82 +1.4 154,124 + HP15_p187g152 0.82 -0.2 154,132 - HP15_p187g152 0.83 +1.4 154,137 - HP15_p187g152 0.84 -0.6 154,156 + HP15_p187g152 0.86 -0.1 154,156 - HP15_p187g152 0.86 -0.4 154,163 + HP15_p187g152 0.87 -0.2 154,195 + +1.4 154,240 - -0.6 154,267 + +0.0 154,349 + -0.6 154,357 - +1.5 154,357 - -0.5 154,440 + -0.2 154,440 + -1.4 154,440 + -0.6 154,446 - -0.4 154,450 + -0.7 154,450 - -0.1 154,453 - -1.2 154,513 + +1.9 154,514 - -1.2 154,514 - -1.0 154,514 - +1.9 154,533 - -1.1 154,540 + -0.0 154,558 + +1.5 154,604 - -0.3 154,668 - +0.4 154,676 - -1.4 154,699 + -0.2 154,714 - -0.5 154,921 + HP15_p187g153 0.14 +0.7 154,921 + HP15_p187g153 0.14 -0.1 154,929 - HP15_p187g153 0.15 -0.3 154,929 - HP15_p187g153 0.15 -0.3 154,943 + HP15_p187g153 0.17 -1.3 154,943 + HP15_p187g153 0.17 -1.5 154,955 + HP15_p187g153 0.19 -0.0 154,995 - HP15_p187g153 0.25 -1.2 155,065 + HP15_p187g153 0.36 -0.3 155,073 - HP15_p187g153 0.37 -0.4 155,073 - HP15_p187g153 0.37 -0.7 155,122 - HP15_p187g153 0.44 +0.1 155,133 + HP15_p187g153 0.46 +1.6 155,220 - HP15_p187g153 0.59 +1.2 155,269 + HP15_p187g153 0.67 +0.7 155,275 - HP15_p187g153 0.68 -1.1 155,277 - HP15_p187g153 0.68 -1.0 155,339 + -0.2 155,339 + HP15_p187g153 0.78 -0.4 155,339 + HP15_p187g153 0.78 -0.9 155,339 + HP15_p187g153 0.78 +1.5 155,347 - HP15_p187g153 0.79 +1.2 155,478 + +1.3 155,478 + +1.3 155,494 + +0.9 155,519 - -0.6 155,552 + -0.1 155,557 + -0.4 155,559 + -0.3 155,559 + -0.8 155,559 + +1.6 155,559 + -0.7 155,560 - -0.6 155,560 - +0.2 155,560 - -0.8 155,560 - -0.2 155,567 - +1.1 155,567 - -0.1 155,567 - -0.7 155,567 - +1.3 155,567 - -0.3 155,567 - +0.6 155,567 - -1.1 155,567 - -0.7 155,573 + +1.5 155,578 + -0.1 155,586 - -0.7 155,586 - -1.3 155,644 - +1.2 155,675 - +1.2 155,678 + -0.3 155,678 + +1.5 155,686 - +0.8 155,690 + -0.7 155,703 - -0.3 155,740 + HP15_p187g154 0.33 -0.1 155,804 + HP15_p187g154 0.79 +0.4 155,804 + HP15_p187g154 0.79 -0.3 155,817 - HP15_p187g154 0.88 +1.5 155,903 - +1.6 155,912 + -0.7 155,920 + +2.3 155,927 + -0.0 155,937 + -0.6 155,945 - +1.2 156,021 + +1.4 156,029 - -0.7 156,049 - +0.4 156,069 + +1.5 156,073 - +0.4 156,077 - -0.2 156,087 + HP15_p187g155 0.10 -1.3 156,105 + HP15_p187g155 0.11 +0.4 156,130 + HP15_p187g155 0.13 +0.2 156,130 + HP15_p187g155 0.13 -1.6 156,182 + HP15_p187g155 0.17 +0.9 156,216 + HP15_p187g155 0.19 -0.4 156,224 - HP15_p187g155 0.19 -1.9 156,226 + HP15_p187g155 0.20 -0.8 156,234 - HP15_p187g155 0.20 +0.2 156,234 - HP15_p187g155 0.20 +1.3 156,239 - HP15_p187g155 0.20 +1.8 156,338 + HP15_p187g155 0.27 -0.7 156,346 - HP15_p187g155 0.28 +0.8 156,380 - HP15_p187g155 0.30 +1.7 156,382 + HP15_p187g155 0.30 +0.3 156,451 + HP15_p187g155 0.35 +0.0 156,451 + HP15_p187g155 0.35 +0.3 156,451 + HP15_p187g155 0.35 -0.3 156,451 + HP15_p187g155 0.35 -0.4 156,462 + HP15_p187g155 0.36 -0.2 156,470 - HP15_p187g155 0.36 +0.0 156,472 + HP15_p187g155 0.36 -0.6 156,482 + HP15_p187g155 0.37 +1.3 156,482 - HP15_p187g155 0.37 -0.8
Or see this region's nucleotide sequence