Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_417 and HP15_418 are separated by 0 nucleotides HP15_418 and HP15_419 are separated by 36 nucleotides HP15_419 and HP15_420 are separated by 572 nucleotides
HP15_417: HP15_417 - type II secretion system protein, at 413,171 to 414,400
_417
HP15_418: HP15_418 - conserved hypothetical protein, at 414,401 to 414,982
_418
HP15_419: HP15_419 - pilin, at 415,019 to 415,537
_419
HP15_420: HP15_420 - type II secretory pathway, pseudopilin PulG, at 416,110 to 416,577
_420
Position (kb) 415
416 Strain fitness (log2 ratio) -1
0
1
2 at 414.019 kb on + strand, within HP15_417 at 414.094 kb on + strand, within HP15_417 at 414.102 kb on - strand, within HP15_417 at 414.102 kb on - strand, within HP15_417 at 414.109 kb on + strand, within HP15_417 at 414.144 kb on - strand, within HP15_417 at 414.146 kb on + strand, within HP15_417 at 414.531 kb on + strand, within HP15_418 at 414.602 kb on - strand, within HP15_418 at 414.702 kb on - strand, within HP15_418 at 414.775 kb on - strand, within HP15_418 at 414.852 kb on - strand, within HP15_418 at 414.852 kb on - strand, within HP15_418 at 415.000 kb on + strand at 415.098 kb on - strand, within HP15_419 at 415.132 kb on + strand, within HP15_419 at 415.166 kb on - strand, within HP15_419 at 415.201 kb on + strand, within HP15_419 at 415.209 kb on - strand, within HP15_419 at 415.209 kb on - strand, within HP15_419 at 415.352 kb on - strand, within HP15_419 at 415.475 kb on + strand, within HP15_419 at 415.512 kb on + strand at 415.520 kb on - strand at 415.635 kb on - strand at 415.731 kb on + strand at 415.887 kb on + strand at 415.889 kb on + strand at 415.927 kb on - strand at 415.960 kb on - strand at 416.075 kb on + strand at 416.227 kb on + strand, within HP15_420 at 416.399 kb on - strand, within HP15_420 at 416.511 kb on + strand, within HP15_420
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 414,019 + HP15_417 0.69 +1.5 414,094 + HP15_417 0.75 +1.7 414,102 - HP15_417 0.76 -0.2 414,102 - HP15_417 0.76 +0.2 414,109 + HP15_417 0.76 -0.1 414,144 - HP15_417 0.79 -0.2 414,146 + HP15_417 0.79 +1.3 414,531 + HP15_418 0.22 +1.2 414,602 - HP15_418 0.35 -0.0 414,702 - HP15_418 0.52 -0.4 414,775 - HP15_418 0.64 +1.6 414,852 - HP15_418 0.77 +1.6 414,852 - HP15_418 0.77 -1.0 415,000 + +1.7 415,098 - HP15_419 0.15 -1.3 415,132 + HP15_419 0.22 +1.8 415,166 - HP15_419 0.28 -0.5 415,201 + HP15_419 0.35 -0.5 415,209 - HP15_419 0.37 -0.2 415,209 - HP15_419 0.37 -1.5 415,352 - HP15_419 0.64 -1.4 415,475 + HP15_419 0.88 +0.4 415,512 + -0.6 415,520 - +0.0 415,635 - +0.4 415,731 + -0.4 415,887 + +1.2 415,889 + -0.7 415,927 - +0.8 415,960 - -0.2 416,075 + -0.1 416,227 + HP15_420 0.25 -0.1 416,399 - HP15_420 0.62 +1.5 416,511 + HP15_420 0.86 +0.4
Or see this region's nucleotide sequence