Strain Fitness in Marinobacter adhaerens HP15 around HP15_3707

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3706 and HP15_3707 are separated by 100 nucleotidesHP15_3707 and HP15_3708 are separated by 205 nucleotides HP15_3706: HP15_3706 - DNA gyrase subunit B-like protein, at 3,911,283 to 3,913,622 _3706 HP15_3707: HP15_3707 - uncharacterized conserved protein UCP028137, membrane, at 3,913,723 to 3,914,487 _3707 HP15_3708: HP15_3708 - 4-aminobutyrate aminotransferase, at 3,914,693 to 3,915,970 _3708 Position (kb) 3913 3914 3915Strain fitness (log2 ratio) -1 0 1 2at 3914.613 kb on + strandat 3914.622 kb on - strandat 3914.689 kb on - strandat 3914.780 kb on + strandat 3914.787 kb on + strandat 3914.795 kb on - strandat 3915.027 kb on - strand, within HP15_3708at 3915.049 kb on + strand, within HP15_3708at 3915.052 kb on - strand, within HP15_3708at 3915.092 kb on - strand, within HP15_3708at 3915.103 kb on + strand, within HP15_3708at 3915.114 kb on + strand, within HP15_3708at 3915.170 kb on - strand, within HP15_3708at 3915.229 kb on - strand, within HP15_3708at 3915.253 kb on - strand, within HP15_3708at 3915.339 kb on + strand, within HP15_3708at 3915.347 kb on - strand, within HP15_3708at 3915.377 kb on + strand, within HP15_3708at 3915.377 kb on + strand, within HP15_3708at 3915.385 kb on - strand, within HP15_3708

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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3,914,613 + +1.7
3,914,622 - +0.8
3,914,689 - +1.6
3,914,780 + -0.3
3,914,787 + +2.0
3,914,795 - +1.1
3,915,027 - HP15_3708 0.26 +1.5
3,915,049 + HP15_3708 0.28 -0.2
3,915,052 - HP15_3708 0.28 +1.0
3,915,092 - HP15_3708 0.31 +1.4
3,915,103 + HP15_3708 0.32 -0.2
3,915,114 + HP15_3708 0.33 -0.1
3,915,170 - HP15_3708 0.37 -0.1
3,915,229 - HP15_3708 0.42 +1.0
3,915,253 - HP15_3708 0.44 +1.1
3,915,339 + HP15_3708 0.51 +2.4
3,915,347 - HP15_3708 0.51 -0.4
3,915,377 + HP15_3708 0.54 -0.4
3,915,377 + HP15_3708 0.54 +1.4
3,915,385 - HP15_3708 0.54 +0.4

Or see this region's nucleotide sequence