Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c35110 and PGA1_c35120 are separated by 32 nucleotides PGA1_c35120 and PGA1_c35130 are separated by 129 nucleotides PGA1_c35130 and PGA1_c35140 are separated by 405 nucleotides
PGA1_c35110: PGA1_c35110 - tRNA modification GTPase MnmE, at 3,683,783 to 3,685,075
_c35110
PGA1_c35120: PGA1_c35120 - transcription termination factor Rho, at 3,685,108 to 3,686,379
_c35120
PGA1_c35130: PGA1_c35130 - Predicted membrane protein, at 3,686,509 to 3,686,964
_c35130
PGA1_c35140: PGA1_c35140 - Maf-like protein, at 3,687,370 to 3,687,969
_c35140
Position (kb)
3685
3686
3687 Strain fitness (log2 ratio)
-1
0
1 at 3686.482 kb on - strand at 3686.973 kb on - strand at 3687.165 kb on + strand at 3687.166 kb on + strand at 3687.166 kb on + strand at 3687.299 kb on - strand at 3687.338 kb on - strand at 3687.347 kb on + strand at 3687.347 kb on + strand at 3687.355 kb on - strand at 3687.371 kb on + strand at 3687.371 kb on + strand at 3687.376 kb on + strand at 3687.379 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 3,686,482 - -0.2 3,686,973 - +0.1 3,687,165 + -0.8 3,687,166 + +0.5 3,687,166 + +0.0 3,687,299 - +0.1 3,687,338 - +1.0 3,687,347 + +1.1 3,687,347 + +0.8 3,687,355 - +0.9 3,687,371 + +0.6 3,687,371 + +0.9 3,687,376 + +1.0 3,687,379 - -0.5
Or see this region's nucleotide sequence