Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2830 and HP15_2831 are separated by 177 nucleotides HP15_2831 and HP15_2832 are separated by 95 nucleotides
HP15_2830: HP15_2830 - transcriptional regulator, XRE family, at 2,973,526 to 2,974,308
_2830
HP15_2831: HP15_2831 - conserved hypothetical protein, membrane, at 2,974,486 to 2,974,866
_2831
HP15_2832: HP15_2832 - DNA damage response helicase (yejH or radD) (from data) , at 2,974,962 to 2,976,719
_2832
Position (kb)
2974
2975 Strain fitness (log2 ratio)
-1
0
1
2 at 2973.530 kb on - strand at 2973.530 kb on - strand at 2973.596 kb on + strand at 2973.604 kb on - strand at 2973.740 kb on + strand, within HP15_2830 at 2973.748 kb on - strand, within HP15_2830 at 2973.855 kb on + strand, within HP15_2830 at 2973.861 kb on - strand, within HP15_2830 at 2973.862 kb on - strand, within HP15_2830 at 2974.027 kb on + strand, within HP15_2830 at 2974.082 kb on + strand, within HP15_2830 at 2974.082 kb on + strand, within HP15_2830 at 2974.082 kb on + strand, within HP15_2830 at 2974.082 kb on + strand, within HP15_2830 at 2974.090 kb on - strand, within HP15_2830 at 2974.090 kb on - strand, within HP15_2830 at 2974.090 kb on - strand, within HP15_2830 at 2974.117 kb on - strand, within HP15_2830 at 2974.132 kb on - strand, within HP15_2830 at 2974.213 kb on - strand, within HP15_2830 at 2974.287 kb on + strand at 2974.403 kb on + strand at 2974.426 kb on - strand at 2974.443 kb on + strand at 2974.564 kb on + strand, within HP15_2831 at 2974.598 kb on + strand, within HP15_2831 at 2974.623 kb on + strand, within HP15_2831 at 2974.629 kb on - strand, within HP15_2831 at 2974.663 kb on - strand, within HP15_2831 at 2974.723 kb on + strand, within HP15_2831 at 2974.745 kb on - strand, within HP15_2831 at 2974.762 kb on + strand, within HP15_2831 at 2974.762 kb on + strand, within HP15_2831 at 2974.770 kb on - strand, within HP15_2831 at 2974.770 kb on - strand, within HP15_2831 at 2974.770 kb on - strand, within HP15_2831 at 2974.814 kb on - strand, within HP15_2831 at 2974.849 kb on - strand at 2975.018 kb on + strand at 2975.121 kb on - strand at 2975.277 kb on + strand, within HP15_2832 at 2975.359 kb on - strand, within HP15_2832 at 2975.362 kb on - strand, within HP15_2832 at 2975.432 kb on + strand, within HP15_2832 at 2975.472 kb on - strand, within HP15_2832 at 2975.612 kb on + strand, within HP15_2832 at 2975.674 kb on + strand, within HP15_2832 at 2975.776 kb on + strand, within HP15_2832 at 2975.781 kb on + strand, within HP15_2832 at 2975.786 kb on + strand, within HP15_2832 at 2975.791 kb on + strand, within HP15_2832 at 2975.822 kb on + strand, within HP15_2832 at 2975.852 kb on - strand, within HP15_2832 at 2975.858 kb on + strand, within HP15_2832 at 2975.866 kb on - strand, within HP15_2832
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 2,973,530 - -0.4 2,973,530 - -0.1 2,973,596 + +1.0 2,973,604 - -1.5 2,973,740 + HP15_2830 0.27 +1.4 2,973,748 - HP15_2830 0.28 +2.0 2,973,855 + HP15_2830 0.42 -0.2 2,973,861 - HP15_2830 0.43 -0.3 2,973,862 - HP15_2830 0.43 -0.0 2,974,027 + HP15_2830 0.64 +1.3 2,974,082 + HP15_2830 0.71 +1.5 2,974,082 + HP15_2830 0.71 -0.4 2,974,082 + HP15_2830 0.71 -0.0 2,974,082 + HP15_2830 0.71 +0.4 2,974,090 - HP15_2830 0.72 -0.0 2,974,090 - HP15_2830 0.72 +0.3 2,974,090 - HP15_2830 0.72 +2.4 2,974,117 - HP15_2830 0.75 +1.5 2,974,132 - HP15_2830 0.77 +1.6 2,974,213 - HP15_2830 0.88 +2.4 2,974,287 + +0.4 2,974,403 + +0.3 2,974,426 - -0.3 2,974,443 + -0.7 2,974,564 + HP15_2831 0.20 +1.4 2,974,598 + HP15_2831 0.29 -0.3 2,974,623 + HP15_2831 0.36 -0.8 2,974,629 - HP15_2831 0.38 +1.4 2,974,663 - HP15_2831 0.46 +0.4 2,974,723 + HP15_2831 0.62 +0.5 2,974,745 - HP15_2831 0.68 -1.3 2,974,762 + HP15_2831 0.72 -0.1 2,974,762 + HP15_2831 0.72 -0.2 2,974,770 - HP15_2831 0.75 -1.6 2,974,770 - HP15_2831 0.75 -0.3 2,974,770 - HP15_2831 0.75 +0.4 2,974,814 - HP15_2831 0.86 -0.8 2,974,849 - -0.3 2,975,018 + -0.3 2,975,121 - -0.3 2,975,277 + HP15_2832 0.18 +1.5 2,975,359 - HP15_2832 0.23 -0.3 2,975,362 - HP15_2832 0.23 +0.1 2,975,432 + HP15_2832 0.27 +0.7 2,975,472 - HP15_2832 0.29 -0.1 2,975,612 + HP15_2832 0.37 +1.5 2,975,674 + HP15_2832 0.41 -0.0 2,975,776 + HP15_2832 0.46 +0.2 2,975,781 + HP15_2832 0.47 -0.2 2,975,786 + HP15_2832 0.47 -0.2 2,975,791 + HP15_2832 0.47 -1.6 2,975,822 + HP15_2832 0.49 -0.4 2,975,852 - HP15_2832 0.51 +0.4 2,975,858 + HP15_2832 0.51 +1.4 2,975,866 - HP15_2832 0.51 -0.6
Or see this region's nucleotide sequence