Strain Fitness in Marinobacter adhaerens HP15 around HP15_2831

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2830 and HP15_2831 are separated by 177 nucleotidesHP15_2831 and HP15_2832 are separated by 95 nucleotides HP15_2830: HP15_2830 - transcriptional regulator, XRE family, at 2,973,526 to 2,974,308 _2830 HP15_2831: HP15_2831 - conserved hypothetical protein, membrane, at 2,974,486 to 2,974,866 _2831 HP15_2832: HP15_2832 - DNA damage response helicase (yejH or radD) (from data), at 2,974,962 to 2,976,719 _2832 Position (kb) 2974 2975Strain fitness (log2 ratio) -1 0 1 2at 2973.530 kb on - strandat 2973.530 kb on - strandat 2973.596 kb on + strandat 2973.604 kb on - strandat 2973.740 kb on + strand, within HP15_2830at 2973.748 kb on - strand, within HP15_2830at 2973.855 kb on + strand, within HP15_2830at 2973.861 kb on - strand, within HP15_2830at 2973.862 kb on - strand, within HP15_2830at 2974.027 kb on + strand, within HP15_2830at 2974.082 kb on + strand, within HP15_2830at 2974.082 kb on + strand, within HP15_2830at 2974.082 kb on + strand, within HP15_2830at 2974.082 kb on + strand, within HP15_2830at 2974.090 kb on - strand, within HP15_2830at 2974.090 kb on - strand, within HP15_2830at 2974.090 kb on - strand, within HP15_2830at 2974.117 kb on - strand, within HP15_2830at 2974.132 kb on - strand, within HP15_2830at 2974.213 kb on - strand, within HP15_2830at 2974.287 kb on + strandat 2974.403 kb on + strandat 2974.426 kb on - strandat 2974.443 kb on + strandat 2974.564 kb on + strand, within HP15_2831at 2974.598 kb on + strand, within HP15_2831at 2974.623 kb on + strand, within HP15_2831at 2974.629 kb on - strand, within HP15_2831at 2974.663 kb on - strand, within HP15_2831at 2974.723 kb on + strand, within HP15_2831at 2974.745 kb on - strand, within HP15_2831at 2974.762 kb on + strand, within HP15_2831at 2974.762 kb on + strand, within HP15_2831at 2974.770 kb on - strand, within HP15_2831at 2974.770 kb on - strand, within HP15_2831at 2974.770 kb on - strand, within HP15_2831at 2974.814 kb on - strand, within HP15_2831at 2974.849 kb on - strandat 2975.018 kb on + strandat 2975.121 kb on - strandat 2975.277 kb on + strand, within HP15_2832at 2975.359 kb on - strand, within HP15_2832at 2975.362 kb on - strand, within HP15_2832at 2975.432 kb on + strand, within HP15_2832at 2975.472 kb on - strand, within HP15_2832at 2975.612 kb on + strand, within HP15_2832at 2975.674 kb on + strand, within HP15_2832at 2975.776 kb on + strand, within HP15_2832at 2975.781 kb on + strand, within HP15_2832at 2975.786 kb on + strand, within HP15_2832at 2975.791 kb on + strand, within HP15_2832at 2975.822 kb on + strand, within HP15_2832at 2975.852 kb on - strand, within HP15_2832at 2975.858 kb on + strand, within HP15_2832at 2975.866 kb on - strand, within HP15_2832

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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2,973,530 - -0.4
2,973,530 - -0.1
2,973,596 + +1.0
2,973,604 - -1.5
2,973,740 + HP15_2830 0.27 +1.4
2,973,748 - HP15_2830 0.28 +2.0
2,973,855 + HP15_2830 0.42 -0.2
2,973,861 - HP15_2830 0.43 -0.3
2,973,862 - HP15_2830 0.43 -0.0
2,974,027 + HP15_2830 0.64 +1.3
2,974,082 + HP15_2830 0.71 +1.5
2,974,082 + HP15_2830 0.71 -0.4
2,974,082 + HP15_2830 0.71 -0.0
2,974,082 + HP15_2830 0.71 +0.4
2,974,090 - HP15_2830 0.72 -0.0
2,974,090 - HP15_2830 0.72 +0.3
2,974,090 - HP15_2830 0.72 +2.4
2,974,117 - HP15_2830 0.75 +1.5
2,974,132 - HP15_2830 0.77 +1.6
2,974,213 - HP15_2830 0.88 +2.4
2,974,287 + +0.4
2,974,403 + +0.3
2,974,426 - -0.3
2,974,443 + -0.7
2,974,564 + HP15_2831 0.20 +1.4
2,974,598 + HP15_2831 0.29 -0.3
2,974,623 + HP15_2831 0.36 -0.8
2,974,629 - HP15_2831 0.38 +1.4
2,974,663 - HP15_2831 0.46 +0.4
2,974,723 + HP15_2831 0.62 +0.5
2,974,745 - HP15_2831 0.68 -1.3
2,974,762 + HP15_2831 0.72 -0.1
2,974,762 + HP15_2831 0.72 -0.2
2,974,770 - HP15_2831 0.75 -1.6
2,974,770 - HP15_2831 0.75 -0.3
2,974,770 - HP15_2831 0.75 +0.4
2,974,814 - HP15_2831 0.86 -0.8
2,974,849 - -0.3
2,975,018 + -0.3
2,975,121 - -0.3
2,975,277 + HP15_2832 0.18 +1.5
2,975,359 - HP15_2832 0.23 -0.3
2,975,362 - HP15_2832 0.23 +0.1
2,975,432 + HP15_2832 0.27 +0.7
2,975,472 - HP15_2832 0.29 -0.1
2,975,612 + HP15_2832 0.37 +1.5
2,975,674 + HP15_2832 0.41 -0.0
2,975,776 + HP15_2832 0.46 +0.2
2,975,781 + HP15_2832 0.47 -0.2
2,975,786 + HP15_2832 0.47 -0.2
2,975,791 + HP15_2832 0.47 -1.6
2,975,822 + HP15_2832 0.49 -0.4
2,975,852 - HP15_2832 0.51 +0.4
2,975,858 + HP15_2832 0.51 +1.4
2,975,866 - HP15_2832 0.51 -0.6

Or see this region's nucleotide sequence