Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2827 and HP15_2828 are separated by 89 nucleotides HP15_2828 and HP15_2829 are separated by 16 nucleotides HP15_2829 and HP15_2830 are separated by 58 nucleotides
HP15_2827: HP15_2827 - oxidoreductase, aldo/keto reductase family, at 2,971,419 to 2,972,408
_2827
HP15_2828: HP15_2828 - phosphoesterase, at 2,972,498 to 2,972,953
_2828
HP15_2829: HP15_2829 - peptidylprolyl isomerase, FKBP-type, at 2,972,970 to 2,973,467
_2829
HP15_2830: HP15_2830 - transcriptional regulator, XRE family, at 2,973,526 to 2,974,308
_2830
Position (kb)
2972
2973 Strain fitness (log2 ratio)
-1
0
1
2 at 2971.569 kb on + strand, within HP15_2827 at 2971.574 kb on + strand, within HP15_2827 at 2971.627 kb on + strand, within HP15_2827 at 2971.710 kb on - strand, within HP15_2827 at 2971.730 kb on + strand, within HP15_2827 at 2971.738 kb on + strand, within HP15_2827 at 2971.850 kb on - strand, within HP15_2827 at 2971.898 kb on - strand, within HP15_2827 at 2972.016 kb on + strand, within HP15_2827 at 2972.016 kb on + strand, within HP15_2827 at 2972.029 kb on - strand, within HP15_2827 at 2972.034 kb on - strand, within HP15_2827 at 2972.119 kb on + strand, within HP15_2827 at 2972.127 kb on - strand, within HP15_2827 at 2972.380 kb on - strand at 2972.432 kb on + strand at 2972.432 kb on + strand at 2972.538 kb on + strand at 2972.643 kb on + strand, within HP15_2828 at 2972.678 kb on + strand, within HP15_2828 at 2972.725 kb on + strand, within HP15_2828 at 2972.764 kb on - strand, within HP15_2828 at 2972.878 kb on + strand, within HP15_2828 at 2972.973 kb on + strand at 2973.008 kb on + strand at 2973.068 kb on - strand, within HP15_2829 at 2973.136 kb on - strand, within HP15_2829 at 2973.154 kb on + strand, within HP15_2829 at 2973.154 kb on + strand, within HP15_2829 at 2973.162 kb on - strand, within HP15_2829 at 2973.237 kb on - strand, within HP15_2829 at 2973.275 kb on + strand, within HP15_2829 at 2973.301 kb on - strand, within HP15_2829 at 2973.322 kb on + strand, within HP15_2829 at 2973.401 kb on + strand, within HP15_2829 at 2973.449 kb on + strand at 2973.457 kb on - strand at 2973.467 kb on + strand at 2973.530 kb on - strand at 2973.530 kb on - strand at 2973.596 kb on + strand at 2973.604 kb on - strand at 2973.740 kb on + strand, within HP15_2830 at 2973.748 kb on - strand, within HP15_2830 at 2973.855 kb on + strand, within HP15_2830 at 2973.861 kb on - strand, within HP15_2830 at 2973.862 kb on - strand, within HP15_2830
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 2,971,569 + HP15_2827 0.15 -0.3 2,971,574 + HP15_2827 0.16 +1.0 2,971,627 + HP15_2827 0.21 +0.2 2,971,710 - HP15_2827 0.29 -0.2 2,971,730 + HP15_2827 0.31 +1.2 2,971,738 + HP15_2827 0.32 -0.6 2,971,850 - HP15_2827 0.44 -1.5 2,971,898 - HP15_2827 0.48 +0.1 2,972,016 + HP15_2827 0.60 +0.1 2,972,016 + HP15_2827 0.60 -0.4 2,972,029 - HP15_2827 0.62 +0.5 2,972,034 - HP15_2827 0.62 -0.1 2,972,119 + HP15_2827 0.71 -0.3 2,972,127 - HP15_2827 0.72 -0.5 2,972,380 - +0.0 2,972,432 + -0.2 2,972,432 + -0.7 2,972,538 + +1.5 2,972,643 + HP15_2828 0.32 -0.8 2,972,678 + HP15_2828 0.39 +0.0 2,972,725 + HP15_2828 0.50 +1.6 2,972,764 - HP15_2828 0.58 +0.1 2,972,878 + HP15_2828 0.83 -0.6 2,972,973 + -0.5 2,973,008 + -0.6 2,973,068 - HP15_2829 0.20 -0.4 2,973,136 - HP15_2829 0.33 +1.3 2,973,154 + HP15_2829 0.37 +1.2 2,973,154 + HP15_2829 0.37 +1.5 2,973,162 - HP15_2829 0.39 +0.0 2,973,237 - HP15_2829 0.54 +0.6 2,973,275 + HP15_2829 0.61 +1.8 2,973,301 - HP15_2829 0.66 +0.3 2,973,322 + HP15_2829 0.71 -1.1 2,973,401 + HP15_2829 0.87 -0.2 2,973,449 + -0.9 2,973,457 - +0.2 2,973,467 + -0.1 2,973,530 - -0.4 2,973,530 - -0.1 2,973,596 + +1.0 2,973,604 - -1.5 2,973,740 + HP15_2830 0.27 +1.4 2,973,748 - HP15_2830 0.28 +2.0 2,973,855 + HP15_2830 0.42 -0.2 2,973,861 - HP15_2830 0.43 -0.3 2,973,862 - HP15_2830 0.43 -0.0
Or see this region's nucleotide sequence