Strain Fitness in Marinobacter adhaerens HP15 around HP15_2828

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2827 and HP15_2828 are separated by 89 nucleotidesHP15_2828 and HP15_2829 are separated by 16 nucleotidesHP15_2829 and HP15_2830 are separated by 58 nucleotides HP15_2827: HP15_2827 - oxidoreductase, aldo/keto reductase family, at 2,971,419 to 2,972,408 _2827 HP15_2828: HP15_2828 - phosphoesterase, at 2,972,498 to 2,972,953 _2828 HP15_2829: HP15_2829 - peptidylprolyl isomerase, FKBP-type, at 2,972,970 to 2,973,467 _2829 HP15_2830: HP15_2830 - transcriptional regulator, XRE family, at 2,973,526 to 2,974,308 _2830 Position (kb) 2972 2973Strain fitness (log2 ratio) -1 0 1 2at 2971.569 kb on + strand, within HP15_2827at 2971.574 kb on + strand, within HP15_2827at 2971.627 kb on + strand, within HP15_2827at 2971.710 kb on - strand, within HP15_2827at 2971.730 kb on + strand, within HP15_2827at 2971.738 kb on + strand, within HP15_2827at 2971.850 kb on - strand, within HP15_2827at 2971.898 kb on - strand, within HP15_2827at 2972.016 kb on + strand, within HP15_2827at 2972.016 kb on + strand, within HP15_2827at 2972.029 kb on - strand, within HP15_2827at 2972.034 kb on - strand, within HP15_2827at 2972.119 kb on + strand, within HP15_2827at 2972.127 kb on - strand, within HP15_2827at 2972.380 kb on - strandat 2972.432 kb on + strandat 2972.432 kb on + strandat 2972.538 kb on + strandat 2972.643 kb on + strand, within HP15_2828at 2972.678 kb on + strand, within HP15_2828at 2972.725 kb on + strand, within HP15_2828at 2972.764 kb on - strand, within HP15_2828at 2972.878 kb on + strand, within HP15_2828at 2972.973 kb on + strandat 2973.008 kb on + strandat 2973.068 kb on - strand, within HP15_2829at 2973.136 kb on - strand, within HP15_2829at 2973.154 kb on + strand, within HP15_2829at 2973.154 kb on + strand, within HP15_2829at 2973.162 kb on - strand, within HP15_2829at 2973.237 kb on - strand, within HP15_2829at 2973.275 kb on + strand, within HP15_2829at 2973.301 kb on - strand, within HP15_2829at 2973.322 kb on + strand, within HP15_2829at 2973.401 kb on + strand, within HP15_2829at 2973.449 kb on + strandat 2973.457 kb on - strandat 2973.467 kb on + strandat 2973.530 kb on - strandat 2973.530 kb on - strandat 2973.596 kb on + strandat 2973.604 kb on - strandat 2973.740 kb on + strand, within HP15_2830at 2973.748 kb on - strand, within HP15_2830at 2973.855 kb on + strand, within HP15_2830at 2973.861 kb on - strand, within HP15_2830at 2973.862 kb on - strand, within HP15_2830

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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2,971,569 + HP15_2827 0.15 -0.3
2,971,574 + HP15_2827 0.16 +1.0
2,971,627 + HP15_2827 0.21 +0.2
2,971,710 - HP15_2827 0.29 -0.2
2,971,730 + HP15_2827 0.31 +1.2
2,971,738 + HP15_2827 0.32 -0.6
2,971,850 - HP15_2827 0.44 -1.5
2,971,898 - HP15_2827 0.48 +0.1
2,972,016 + HP15_2827 0.60 +0.1
2,972,016 + HP15_2827 0.60 -0.4
2,972,029 - HP15_2827 0.62 +0.5
2,972,034 - HP15_2827 0.62 -0.1
2,972,119 + HP15_2827 0.71 -0.3
2,972,127 - HP15_2827 0.72 -0.5
2,972,380 - +0.0
2,972,432 + -0.2
2,972,432 + -0.7
2,972,538 + +1.5
2,972,643 + HP15_2828 0.32 -0.8
2,972,678 + HP15_2828 0.39 +0.0
2,972,725 + HP15_2828 0.50 +1.6
2,972,764 - HP15_2828 0.58 +0.1
2,972,878 + HP15_2828 0.83 -0.6
2,972,973 + -0.5
2,973,008 + -0.6
2,973,068 - HP15_2829 0.20 -0.4
2,973,136 - HP15_2829 0.33 +1.3
2,973,154 + HP15_2829 0.37 +1.2
2,973,154 + HP15_2829 0.37 +1.5
2,973,162 - HP15_2829 0.39 +0.0
2,973,237 - HP15_2829 0.54 +0.6
2,973,275 + HP15_2829 0.61 +1.8
2,973,301 - HP15_2829 0.66 +0.3
2,973,322 + HP15_2829 0.71 -1.1
2,973,401 + HP15_2829 0.87 -0.2
2,973,449 + -0.9
2,973,457 - +0.2
2,973,467 + -0.1
2,973,530 - -0.4
2,973,530 - -0.1
2,973,596 + +1.0
2,973,604 - -1.5
2,973,740 + HP15_2830 0.27 +1.4
2,973,748 - HP15_2830 0.28 +2.0
2,973,855 + HP15_2830 0.42 -0.2
2,973,861 - HP15_2830 0.43 -0.3
2,973,862 - HP15_2830 0.43 -0.0

Or see this region's nucleotide sequence