Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1949 and HP15_1950 overlap by 1 nucleotides HP15_1950 and HP15_1951 are separated by 74 nucleotides HP15_1951 and HP15_1952 are separated by 20 nucleotides HP15_1952 and HP15_1953 are separated by 113 nucleotides HP15_1953 and HP15_1954 overlap by 4 nucleotides
HP15_1949: HP15_1949 - hypothetical protein, at 2,068,041 to 2,070,623
_1949
HP15_1950: HP15_1950 - hypothetical protein, at 2,070,623 to 2,071,495
_1950
HP15_1951: HP15_1951 - hypothetical protein, at 2,071,570 to 2,071,809
_1951
HP15_1952: HP15_1952 - hypothetical protein, at 2,071,830 to 2,072,120
_1952
HP15_1953: HP15_1953 - hypothetical protein, at 2,072,234 to 2,072,587
_1953
HP15_1954: HP15_1954 - phage tail tape measure protein, family, at 2,072,584 to 2,075,346
_1954
Position (kb)
2071
2072 Strain fitness (log2 ratio)
-1
0
1
2 at 2070.699 kb on + strand at 2070.776 kb on - strand, within HP15_1950 at 2070.792 kb on + strand, within HP15_1950 at 2070.913 kb on + strand, within HP15_1950 at 2070.922 kb on + strand, within HP15_1950 at 2070.923 kb on + strand, within HP15_1950 at 2070.930 kb on - strand, within HP15_1950 at 2071.000 kb on + strand, within HP15_1950 at 2071.170 kb on + strand, within HP15_1950 at 2071.170 kb on + strand, within HP15_1950 at 2071.170 kb on + strand, within HP15_1950 at 2071.170 kb on + strand, within HP15_1950 at 2071.178 kb on - strand, within HP15_1950 at 2071.232 kb on + strand, within HP15_1950 at 2071.232 kb on + strand, within HP15_1950 at 2071.235 kb on - strand, within HP15_1950 at 2071.460 kb on + strand at 2071.470 kb on + strand at 2071.470 kb on + strand at 2071.488 kb on - strand at 2071.555 kb on + strand at 2071.567 kb on + strand at 2071.575 kb on - strand at 2071.604 kb on + strand, within HP15_1951 at 2071.610 kb on - strand, within HP15_1951 at 2071.657 kb on - strand, within HP15_1951 at 2071.664 kb on - strand, within HP15_1951 at 2071.703 kb on - strand, within HP15_1951 at 2071.837 kb on + strand at 2072.030 kb on + strand, within HP15_1952 at 2072.038 kb on - strand, within HP15_1952 at 2072.048 kb on - strand, within HP15_1952 at 2072.076 kb on - strand, within HP15_1952 at 2072.129 kb on + strand at 2072.140 kb on + strand at 2072.147 kb on + strand at 2072.362 kb on - strand, within HP15_1953 at 2072.407 kb on + strand, within HP15_1953 at 2072.420 kb on - strand, within HP15_1953 at 2072.426 kb on + strand, within HP15_1953 at 2072.473 kb on + strand, within HP15_1953 at 2072.485 kb on + strand, within HP15_1953 at 2072.493 kb on - strand, within HP15_1953 at 2072.521 kb on + strand, within HP15_1953 at 2072.529 kb on - strand, within HP15_1953 at 2072.531 kb on + strand, within HP15_1953 at 2072.534 kb on - strand, within HP15_1953 at 2072.615 kb on - strand at 2072.627 kb on - strand at 2072.642 kb on + strand at 2072.709 kb on + strand at 2072.770 kb on - strand at 2072.776 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 2,070,699 + -0.9 2,070,776 - HP15_1950 0.18 +0.7 2,070,792 + HP15_1950 0.19 +0.4 2,070,913 + HP15_1950 0.33 +1.2 2,070,922 + HP15_1950 0.34 -0.1 2,070,923 + HP15_1950 0.34 -0.3 2,070,930 - HP15_1950 0.35 +0.3 2,071,000 + HP15_1950 0.43 +1.5 2,071,170 + HP15_1950 0.63 -0.8 2,071,170 + HP15_1950 0.63 -0.5 2,071,170 + HP15_1950 0.63 -0.3 2,071,170 + HP15_1950 0.63 -0.3 2,071,178 - HP15_1950 0.64 -0.2 2,071,232 + HP15_1950 0.70 +1.5 2,071,232 + HP15_1950 0.70 -0.8 2,071,235 - HP15_1950 0.70 +0.2 2,071,460 + +1.5 2,071,470 + +0.1 2,071,470 + -0.8 2,071,488 - -0.5 2,071,555 + +0.5 2,071,567 + +0.9 2,071,575 - +0.1 2,071,604 + HP15_1951 0.14 +1.0 2,071,610 - HP15_1951 0.17 +0.7 2,071,657 - HP15_1951 0.36 -0.6 2,071,664 - HP15_1951 0.39 -0.4 2,071,703 - HP15_1951 0.55 +0.6 2,071,837 + -0.1 2,072,030 + HP15_1952 0.69 +1.4 2,072,038 - HP15_1952 0.71 +0.7 2,072,048 - HP15_1952 0.75 -0.5 2,072,076 - HP15_1952 0.85 +1.5 2,072,129 + -0.1 2,072,140 + +0.9 2,072,147 + +0.4 2,072,362 - HP15_1953 0.36 +0.8 2,072,407 + HP15_1953 0.49 +1.4 2,072,420 - HP15_1953 0.53 -0.1 2,072,426 + HP15_1953 0.54 +0.9 2,072,473 + HP15_1953 0.68 +1.4 2,072,485 + HP15_1953 0.71 -0.4 2,072,493 - HP15_1953 0.73 +0.3 2,072,521 + HP15_1953 0.81 -0.3 2,072,529 - HP15_1953 0.83 +1.8 2,072,531 + HP15_1953 0.84 +0.3 2,072,534 - HP15_1953 0.85 -0.4 2,072,615 - +1.4 2,072,627 - -0.2 2,072,642 + +1.6 2,072,709 + -0.5 2,072,770 - -0.6 2,072,776 + -0.4
Or see this region's nucleotide sequence