Strain Fitness in Marinobacter adhaerens HP15 around HP15_1951

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1949 and HP15_1950 overlap by 1 nucleotidesHP15_1950 and HP15_1951 are separated by 74 nucleotidesHP15_1951 and HP15_1952 are separated by 20 nucleotidesHP15_1952 and HP15_1953 are separated by 113 nucleotidesHP15_1953 and HP15_1954 overlap by 4 nucleotides HP15_1949: HP15_1949 - hypothetical protein, at 2,068,041 to 2,070,623 _1949 HP15_1950: HP15_1950 - hypothetical protein, at 2,070,623 to 2,071,495 _1950 HP15_1951: HP15_1951 - hypothetical protein, at 2,071,570 to 2,071,809 _1951 HP15_1952: HP15_1952 - hypothetical protein, at 2,071,830 to 2,072,120 _1952 HP15_1953: HP15_1953 - hypothetical protein, at 2,072,234 to 2,072,587 _1953 HP15_1954: HP15_1954 - phage tail tape measure protein, family, at 2,072,584 to 2,075,346 _1954 Position (kb) 2071 2072Strain fitness (log2 ratio) -1 0 1 2at 2070.699 kb on + strandat 2070.776 kb on - strand, within HP15_1950at 2070.792 kb on + strand, within HP15_1950at 2070.913 kb on + strand, within HP15_1950at 2070.922 kb on + strand, within HP15_1950at 2070.923 kb on + strand, within HP15_1950at 2070.930 kb on - strand, within HP15_1950at 2071.000 kb on + strand, within HP15_1950at 2071.170 kb on + strand, within HP15_1950at 2071.170 kb on + strand, within HP15_1950at 2071.170 kb on + strand, within HP15_1950at 2071.170 kb on + strand, within HP15_1950at 2071.178 kb on - strand, within HP15_1950at 2071.232 kb on + strand, within HP15_1950at 2071.232 kb on + strand, within HP15_1950at 2071.235 kb on - strand, within HP15_1950at 2071.460 kb on + strandat 2071.470 kb on + strandat 2071.470 kb on + strandat 2071.488 kb on - strandat 2071.555 kb on + strandat 2071.567 kb on + strandat 2071.575 kb on - strandat 2071.604 kb on + strand, within HP15_1951at 2071.610 kb on - strand, within HP15_1951at 2071.657 kb on - strand, within HP15_1951at 2071.664 kb on - strand, within HP15_1951at 2071.703 kb on - strand, within HP15_1951at 2071.837 kb on + strandat 2072.030 kb on + strand, within HP15_1952at 2072.038 kb on - strand, within HP15_1952at 2072.048 kb on - strand, within HP15_1952at 2072.076 kb on - strand, within HP15_1952at 2072.129 kb on + strandat 2072.140 kb on + strandat 2072.147 kb on + strandat 2072.362 kb on - strand, within HP15_1953at 2072.407 kb on + strand, within HP15_1953at 2072.420 kb on - strand, within HP15_1953at 2072.426 kb on + strand, within HP15_1953at 2072.473 kb on + strand, within HP15_1953at 2072.485 kb on + strand, within HP15_1953at 2072.493 kb on - strand, within HP15_1953at 2072.521 kb on + strand, within HP15_1953at 2072.529 kb on - strand, within HP15_1953at 2072.531 kb on + strand, within HP15_1953at 2072.534 kb on - strand, within HP15_1953at 2072.615 kb on - strandat 2072.627 kb on - strandat 2072.642 kb on + strandat 2072.709 kb on + strandat 2072.770 kb on - strandat 2072.776 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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2,070,699 + -0.9
2,070,776 - HP15_1950 0.18 +0.7
2,070,792 + HP15_1950 0.19 +0.4
2,070,913 + HP15_1950 0.33 +1.2
2,070,922 + HP15_1950 0.34 -0.1
2,070,923 + HP15_1950 0.34 -0.3
2,070,930 - HP15_1950 0.35 +0.3
2,071,000 + HP15_1950 0.43 +1.5
2,071,170 + HP15_1950 0.63 -0.8
2,071,170 + HP15_1950 0.63 -0.5
2,071,170 + HP15_1950 0.63 -0.3
2,071,170 + HP15_1950 0.63 -0.3
2,071,178 - HP15_1950 0.64 -0.2
2,071,232 + HP15_1950 0.70 +1.5
2,071,232 + HP15_1950 0.70 -0.8
2,071,235 - HP15_1950 0.70 +0.2
2,071,460 + +1.5
2,071,470 + +0.1
2,071,470 + -0.8
2,071,488 - -0.5
2,071,555 + +0.5
2,071,567 + +0.9
2,071,575 - +0.1
2,071,604 + HP15_1951 0.14 +1.0
2,071,610 - HP15_1951 0.17 +0.7
2,071,657 - HP15_1951 0.36 -0.6
2,071,664 - HP15_1951 0.39 -0.4
2,071,703 - HP15_1951 0.55 +0.6
2,071,837 + -0.1
2,072,030 + HP15_1952 0.69 +1.4
2,072,038 - HP15_1952 0.71 +0.7
2,072,048 - HP15_1952 0.75 -0.5
2,072,076 - HP15_1952 0.85 +1.5
2,072,129 + -0.1
2,072,140 + +0.9
2,072,147 + +0.4
2,072,362 - HP15_1953 0.36 +0.8
2,072,407 + HP15_1953 0.49 +1.4
2,072,420 - HP15_1953 0.53 -0.1
2,072,426 + HP15_1953 0.54 +0.9
2,072,473 + HP15_1953 0.68 +1.4
2,072,485 + HP15_1953 0.71 -0.4
2,072,493 - HP15_1953 0.73 +0.3
2,072,521 + HP15_1953 0.81 -0.3
2,072,529 - HP15_1953 0.83 +1.8
2,072,531 + HP15_1953 0.84 +0.3
2,072,534 - HP15_1953 0.85 -0.4
2,072,615 - +1.4
2,072,627 - -0.2
2,072,642 + +1.6
2,072,709 + -0.5
2,072,770 - -0.6
2,072,776 + -0.4

Or see this region's nucleotide sequence