Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c14060

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c14050 and PGA1_c14060 are separated by 110 nucleotidesPGA1_c14060 and PGA1_c14070 are separated by 28 nucleotides PGA1_c14050: PGA1_c14050 - inner membrane protein, at 1,456,053 to 1,457,363 _c14050 PGA1_c14060: PGA1_c14060 - tyrosine recombinase XerD, at 1,457,474 to 1,458,487 _c14060 PGA1_c14070: PGA1_c14070 - hypothetical protein, at 1,458,516 to 1,460,189 _c14070 Position (kb) 1457 1458 1459Strain fitness (log2 ratio) -1 0 1at 1457.366 kb on - strandat 1457.366 kb on - strandat 1457.433 kb on + strandat 1457.433 kb on - strandat 1457.498 kb on - strandat 1457.520 kb on - strandat 1457.520 kb on - strandat 1457.629 kb on - strand, within PGA1_c14060at 1457.692 kb on + strand, within PGA1_c14060at 1457.700 kb on - strand, within PGA1_c14060at 1457.928 kb on + strand, within PGA1_c14060at 1457.936 kb on - strand, within PGA1_c14060at 1458.015 kb on + strand, within PGA1_c14060at 1458.120 kb on + strand, within PGA1_c14060at 1458.140 kb on - strand, within PGA1_c14060at 1458.150 kb on + strand, within PGA1_c14060at 1458.212 kb on - strand, within PGA1_c14060at 1458.248 kb on - strand, within PGA1_c14060at 1458.259 kb on - strand, within PGA1_c14060at 1458.482 kb on + strandat 1458.482 kb on + strandat 1458.490 kb on - strandat 1458.490 kb on - strandat 1458.490 kb on - strandat 1458.710 kb on + strand, within PGA1_c14070at 1458.768 kb on - strand, within PGA1_c14070at 1458.781 kb on - strand, within PGA1_c14070at 1458.789 kb on - strand, within PGA1_c14070at 1458.789 kb on - strandat 1458.816 kb on + strand, within PGA1_c14070at 1459.105 kb on + strand, within PGA1_c14070at 1459.105 kb on + strand, within PGA1_c14070at 1459.111 kb on + strand, within PGA1_c14070at 1459.258 kb on + strand, within PGA1_c14070at 1459.275 kb on + strand, within PGA1_c14070at 1459.414 kb on + strand, within PGA1_c14070at 1459.467 kb on - strand, within PGA1_c14070at 1459.485 kb on + strand, within PGA1_c14070

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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1,457,366 - -1.4
1,457,366 - +1.0
1,457,433 + +0.4
1,457,433 - +1.4
1,457,498 - -0.2
1,457,520 - -0.1
1,457,520 - +0.3
1,457,629 - PGA1_c14060 0.15 -0.5
1,457,692 + PGA1_c14060 0.21 -1.3
1,457,700 - PGA1_c14060 0.22 -1.2
1,457,928 + PGA1_c14060 0.45 -1.1
1,457,936 - PGA1_c14060 0.46 +0.3
1,458,015 + PGA1_c14060 0.53 -1.4
1,458,120 + PGA1_c14060 0.64 -0.1
1,458,140 - PGA1_c14060 0.66 -1.1
1,458,150 + PGA1_c14060 0.67 -0.3
1,458,212 - PGA1_c14060 0.73 +0.3
1,458,248 - PGA1_c14060 0.76 -1.1
1,458,259 - PGA1_c14060 0.77 +0.0
1,458,482 + -0.0
1,458,482 + +0.6
1,458,490 - +0.1
1,458,490 - -0.3
1,458,490 - +0.5
1,458,710 + PGA1_c14070 0.12 -0.2
1,458,768 - PGA1_c14070 0.15 +1.5
1,458,781 - PGA1_c14070 0.16 +0.5
1,458,789 - PGA1_c14070 0.16 -0.3
1,458,789 - +1.3
1,458,816 + PGA1_c14070 0.18 +0.6
1,459,105 + PGA1_c14070 0.35 +0.5
1,459,105 + PGA1_c14070 0.35 +0.8
1,459,111 + PGA1_c14070 0.36 +0.2
1,459,258 + PGA1_c14070 0.44 -0.2
1,459,275 + PGA1_c14070 0.45 -0.3
1,459,414 + PGA1_c14070 0.54 +0.5
1,459,467 - PGA1_c14070 0.57 +0.7
1,459,485 + PGA1_c14070 0.58 -0.6

Or see this region's nucleotide sequence