Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c14050 and PGA1_c14060 are separated by 110 nucleotides PGA1_c14060 and PGA1_c14070 are separated by 28 nucleotides
PGA1_c14050: PGA1_c14050 - inner membrane protein, at 1,456,053 to 1,457,363
_c14050
PGA1_c14060: PGA1_c14060 - tyrosine recombinase XerD, at 1,457,474 to 1,458,487
_c14060
PGA1_c14070: PGA1_c14070 - hypothetical protein, at 1,458,516 to 1,460,189
_c14070
Position (kb)
1457
1458
1459 Strain fitness (log2 ratio)
-1
0
1 at 1457.366 kb on - strand at 1457.366 kb on - strand at 1457.433 kb on + strand at 1457.433 kb on - strand at 1457.498 kb on - strand at 1457.520 kb on - strand at 1457.520 kb on - strand at 1457.629 kb on - strand, within PGA1_c14060 at 1457.692 kb on + strand, within PGA1_c14060 at 1457.700 kb on - strand, within PGA1_c14060 at 1457.928 kb on + strand, within PGA1_c14060 at 1457.936 kb on - strand, within PGA1_c14060 at 1458.015 kb on + strand, within PGA1_c14060 at 1458.120 kb on + strand, within PGA1_c14060 at 1458.140 kb on - strand, within PGA1_c14060 at 1458.150 kb on + strand, within PGA1_c14060 at 1458.212 kb on - strand, within PGA1_c14060 at 1458.248 kb on - strand, within PGA1_c14060 at 1458.259 kb on - strand, within PGA1_c14060 at 1458.482 kb on + strand at 1458.482 kb on + strand at 1458.490 kb on - strand at 1458.490 kb on - strand at 1458.490 kb on - strand at 1458.710 kb on + strand, within PGA1_c14070 at 1458.768 kb on - strand, within PGA1_c14070 at 1458.781 kb on - strand, within PGA1_c14070 at 1458.789 kb on - strand, within PGA1_c14070 at 1458.789 kb on - strand at 1458.816 kb on + strand, within PGA1_c14070 at 1459.105 kb on + strand, within PGA1_c14070 at 1459.105 kb on + strand, within PGA1_c14070 at 1459.111 kb on + strand, within PGA1_c14070 at 1459.258 kb on + strand, within PGA1_c14070 at 1459.275 kb on + strand, within PGA1_c14070 at 1459.414 kb on + strand, within PGA1_c14070 at 1459.467 kb on - strand, within PGA1_c14070 at 1459.485 kb on + strand, within PGA1_c14070
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 1,457,366 - -1.4 1,457,366 - +1.0 1,457,433 + +0.4 1,457,433 - +1.4 1,457,498 - -0.2 1,457,520 - -0.1 1,457,520 - +0.3 1,457,629 - PGA1_c14060 0.15 -0.5 1,457,692 + PGA1_c14060 0.21 -1.3 1,457,700 - PGA1_c14060 0.22 -1.2 1,457,928 + PGA1_c14060 0.45 -1.1 1,457,936 - PGA1_c14060 0.46 +0.3 1,458,015 + PGA1_c14060 0.53 -1.4 1,458,120 + PGA1_c14060 0.64 -0.1 1,458,140 - PGA1_c14060 0.66 -1.1 1,458,150 + PGA1_c14060 0.67 -0.3 1,458,212 - PGA1_c14060 0.73 +0.3 1,458,248 - PGA1_c14060 0.76 -1.1 1,458,259 - PGA1_c14060 0.77 +0.0 1,458,482 + -0.0 1,458,482 + +0.6 1,458,490 - +0.1 1,458,490 - -0.3 1,458,490 - +0.5 1,458,710 + PGA1_c14070 0.12 -0.2 1,458,768 - PGA1_c14070 0.15 +1.5 1,458,781 - PGA1_c14070 0.16 +0.5 1,458,789 - PGA1_c14070 0.16 -0.3 1,458,789 - +1.3 1,458,816 + PGA1_c14070 0.18 +0.6 1,459,105 + PGA1_c14070 0.35 +0.5 1,459,105 + PGA1_c14070 0.35 +0.8 1,459,111 + PGA1_c14070 0.36 +0.2 1,459,258 + PGA1_c14070 0.44 -0.2 1,459,275 + PGA1_c14070 0.45 -0.3 1,459,414 + PGA1_c14070 0.54 +0.5 1,459,467 - PGA1_c14070 0.57 +0.7 1,459,485 + PGA1_c14070 0.58 -0.6
Or see this region's nucleotide sequence