Strain Fitness in Shewanella amazonensis SB2B around Sama_1655

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_1654 and Sama_1655 are separated by 37 nucleotidesSama_1655 and Sama_1656 are separated by 173 nucleotides Sama_1654: Sama_1654 - hypothetical protein (RefSeq), at 2,019,007 to 2,019,693 _1654 Sama_1655: Sama_1655 - LacI family transcription regulator (RefSeq), at 2,019,731 to 2,020,831 _1655 Sama_1656: Sama_1656 - glucan 1,4-alpha-glucosidase (RefSeq), at 2,021,005 to 2,023,458 _1656 Position (kb) 2019 2020 2021Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2018.740 kb on + strandat 2018.747 kb on + strandat 2018.747 kb on + strandat 2018.747 kb on + strandat 2018.747 kb on + strandat 2018.747 kb on + strandat 2018.751 kb on + strandat 2018.751 kb on + strandat 2018.751 kb on + strandat 2018.751 kb on + strandat 2018.751 kb on + strandat 2018.751 kb on + strandat 2018.751 kb on + strandat 2018.751 kb on + strandat 2018.752 kb on - strandat 2018.752 kb on - strandat 2018.752 kb on - strandat 2018.752 kb on - strandat 2018.752 kb on - strandat 2018.865 kb on + strandat 2018.865 kb on + strandat 2018.865 kb on + strandat 2018.866 kb on - strandat 2018.872 kb on + strandat 2018.872 kb on + strandat 2018.872 kb on + strandat 2018.872 kb on + strandat 2018.872 kb on + strandat 2018.873 kb on - strandat 2018.873 kb on - strandat 2018.873 kb on - strandat 2018.873 kb on - strandat 2018.875 kb on - strandat 2019.023 kb on + strandat 2019.023 kb on + strandat 2019.024 kb on - strandat 2019.024 kb on - strandat 2019.027 kb on + strandat 2019.027 kb on + strandat 2019.028 kb on - strandat 2019.028 kb on - strandat 2019.041 kb on + strandat 2019.041 kb on + strandat 2019.041 kb on + strandat 2019.041 kb on + strandat 2019.041 kb on + strandat 2019.042 kb on - strandat 2019.042 kb on - strandat 2019.126 kb on + strand, within Sama_1654at 2019.144 kb on - strand, within Sama_1654at 2019.244 kb on + strand, within Sama_1654at 2019.244 kb on + strand, within Sama_1654at 2019.246 kb on + strand, within Sama_1654at 2019.246 kb on + strand, within Sama_1654at 2019.246 kb on + strand, within Sama_1654at 2019.247 kb on - strand, within Sama_1654at 2019.247 kb on - strand, within Sama_1654at 2019.328 kb on - strand, within Sama_1654at 2019.483 kb on + strand, within Sama_1654at 2019.484 kb on - strand, within Sama_1654at 2019.647 kb on + strandat 2019.647 kb on + strandat 2019.648 kb on - strandat 2019.691 kb on + strandat 2019.704 kb on + strandat 2019.706 kb on + strandat 2019.706 kb on + strandat 2019.727 kb on + strandat 2019.779 kb on + strandat 2019.779 kb on + strandat 2019.780 kb on - strandat 2019.782 kb on - strandat 2019.796 kb on + strandat 2019.935 kb on - strand, within Sama_1655at 2019.939 kb on - strand, within Sama_1655at 2019.939 kb on - strand, within Sama_1655at 2020.037 kb on - strand, within Sama_1655at 2020.066 kb on + strand, within Sama_1655at 2020.066 kb on + strand, within Sama_1655at 2020.066 kb on + strand, within Sama_1655at 2020.066 kb on + strand, within Sama_1655at 2020.067 kb on - strand, within Sama_1655at 2020.067 kb on - strand, within Sama_1655at 2020.078 kb on + strand, within Sama_1655at 2020.145 kb on + strand, within Sama_1655at 2020.145 kb on + strand, within Sama_1655at 2020.172 kb on - strand, within Sama_1655at 2020.174 kb on + strand, within Sama_1655at 2020.205 kb on + strand, within Sama_1655at 2020.206 kb on - strand, within Sama_1655at 2020.206 kb on - strand, within Sama_1655at 2020.320 kb on + strand, within Sama_1655at 2020.320 kb on + strand, within Sama_1655at 2020.323 kb on + strand, within Sama_1655at 2020.323 kb on + strand, within Sama_1655at 2020.324 kb on - strand, within Sama_1655at 2020.338 kb on + strand, within Sama_1655at 2020.338 kb on + strand, within Sama_1655at 2020.339 kb on - strand, within Sama_1655at 2020.435 kb on + strand, within Sama_1655at 2020.435 kb on + strand, within Sama_1655at 2020.436 kb on - strand, within Sama_1655at 2020.522 kb on + strand, within Sama_1655at 2020.643 kb on + strand, within Sama_1655at 2020.643 kb on + strand, within Sama_1655at 2020.644 kb on - strand, within Sama_1655at 2020.651 kb on + strand, within Sama_1655at 2020.687 kb on + strand, within Sama_1655at 2020.687 kb on + strand, within Sama_1655at 2020.687 kb on + strand, within Sama_1655at 2020.688 kb on - strand, within Sama_1655at 2020.776 kb on + strandat 2020.882 kb on + strandat 2020.972 kb on + strandat 2020.972 kb on + strandat 2020.973 kb on - strandat 2020.986 kb on + strandat 2020.987 kb on - strandat 2021.006 kb on + strandat 2021.007 kb on - strandat 2021.042 kb on + strandat 2021.042 kb on + strandat 2021.043 kb on - strandat 2021.043 kb on - strandat 2021.046 kb on + strandat 2021.086 kb on + strandat 2021.090 kb on + strandat 2021.130 kb on + strandat 2021.130 kb on + strandat 2021.131 kb on - strandat 2021.199 kb on + strandat 2021.200 kb on - strandat 2021.237 kb on + strandat 2021.237 kb on + strandat 2021.238 kb on - strandat 2021.238 kb on - strandat 2021.241 kb on + strandat 2021.241 kb on + strandat 2021.241 kb on + strandat 2021.242 kb on - strandat 2021.242 kb on - strandat 2021.242 kb on - strandat 2021.242 kb on - strandat 2021.309 kb on + strand, within Sama_1656at 2021.309 kb on + strand, within Sama_1656at 2021.384 kb on + strand, within Sama_1656at 2021.385 kb on - strand, within Sama_1656at 2021.385 kb on - strand, within Sama_1656at 2021.404 kb on - strand, within Sama_1656at 2021.404 kb on - strand, within Sama_1656at 2021.632 kb on - strand, within Sama_1656at 2021.632 kb on - strand, within Sama_1656at 2021.689 kb on - strand, within Sama_1656at 2021.689 kb on - strand, within Sama_1656at 2021.690 kb on + strand, within Sama_1656at 2021.691 kb on - strand, within Sama_1656at 2021.691 kb on - strand, within Sama_1656at 2021.722 kb on + strand, within Sama_1656at 2021.727 kb on + strand, within Sama_1656at 2021.750 kb on + strand, within Sama_1656at 2021.750 kb on + strand, within Sama_1656at 2021.750 kb on + strand, within Sama_1656at 2021.751 kb on - strand, within Sama_1656at 2021.771 kb on + strand, within Sama_1656

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,018,740 + -0.6
2,018,747 + -0.7
2,018,747 + +0.2
2,018,747 + +0.6
2,018,747 + -0.9
2,018,747 + +0.0
2,018,751 + -1.1
2,018,751 + +0.5
2,018,751 + +0.2
2,018,751 + +0.5
2,018,751 + -0.7
2,018,751 + -1.2
2,018,751 + +0.0
2,018,751 + -0.5
2,018,752 - -0.1
2,018,752 - -0.2
2,018,752 - -1.1
2,018,752 - +1.6
2,018,752 - -1.0
2,018,865 + +0.3
2,018,865 + -0.4
2,018,865 + -3.0
2,018,866 - +0.9
2,018,872 + +0.8
2,018,872 + +0.4
2,018,872 + +0.2
2,018,872 + -1.0
2,018,872 + +1.4
2,018,873 - +0.7
2,018,873 - -0.2
2,018,873 - +1.0
2,018,873 - +0.2
2,018,875 - -1.3
2,019,023 + -0.5
2,019,023 + +0.5
2,019,024 - -2.8
2,019,024 - -0.2
2,019,027 + +0.5
2,019,027 + -1.0
2,019,028 - -0.5
2,019,028 - -1.1
2,019,041 + +0.0
2,019,041 + +2.0
2,019,041 + -0.5
2,019,041 + +0.5
2,019,041 + +0.0
2,019,042 - -2.3
2,019,042 - -0.1
2,019,126 + Sama_1654 0.17 -0.4
2,019,144 - Sama_1654 0.20 -0.7
2,019,244 + Sama_1654 0.34 +1.4
2,019,244 + Sama_1654 0.34 +0.0
2,019,246 + Sama_1654 0.35 +1.9
2,019,246 + Sama_1654 0.35 -0.3
2,019,246 + Sama_1654 0.35 +0.1
2,019,247 - Sama_1654 0.35 -0.2
2,019,247 - Sama_1654 0.35 -0.8
2,019,328 - Sama_1654 0.47 -2.3
2,019,483 + Sama_1654 0.69 +0.2
2,019,484 - Sama_1654 0.69 -1.0
2,019,647 + -0.7
2,019,647 + +0.0
2,019,648 - -0.5
2,019,691 + +0.4
2,019,704 + +1.0
2,019,706 + +0.3
2,019,706 + -0.5
2,019,727 + -0.8
2,019,779 + -0.2
2,019,779 + +1.4
2,019,780 - -0.2
2,019,782 - -0.4
2,019,796 + -0.3
2,019,935 - Sama_1655 0.19 +2.8
2,019,939 - Sama_1655 0.19 -1.3
2,019,939 - Sama_1655 0.19 -0.4
2,020,037 - Sama_1655 0.28 -1.0
2,020,066 + Sama_1655 0.30 -1.0
2,020,066 + Sama_1655 0.30 -0.5
2,020,066 + Sama_1655 0.30 -0.7
2,020,066 + Sama_1655 0.30 -1.8
2,020,067 - Sama_1655 0.31 +1.2
2,020,067 - Sama_1655 0.31 -1.1
2,020,078 + Sama_1655 0.32 -1.1
2,020,145 + Sama_1655 0.38 -1.5
2,020,145 + Sama_1655 0.38 +0.8
2,020,172 - Sama_1655 0.40 -0.6
2,020,174 + Sama_1655 0.40 +0.6
2,020,205 + Sama_1655 0.43 +0.1
2,020,206 - Sama_1655 0.43 +0.2
2,020,206 - Sama_1655 0.43 -0.3
2,020,320 + Sama_1655 0.53 -0.1
2,020,320 + Sama_1655 0.53 -0.4
2,020,323 + Sama_1655 0.54 +0.7
2,020,323 + Sama_1655 0.54 -0.7
2,020,324 - Sama_1655 0.54 -1.3
2,020,338 + Sama_1655 0.55 +0.3
2,020,338 + Sama_1655 0.55 +0.1
2,020,339 - Sama_1655 0.55 -0.8
2,020,435 + Sama_1655 0.64 -0.8
2,020,435 + Sama_1655 0.64 -0.1
2,020,436 - Sama_1655 0.64 -0.6
2,020,522 + Sama_1655 0.72 +0.0
2,020,643 + Sama_1655 0.83 -1.3
2,020,643 + Sama_1655 0.83 +0.0
2,020,644 - Sama_1655 0.83 -1.3
2,020,651 + Sama_1655 0.84 -0.4
2,020,687 + Sama_1655 0.87 +0.3
2,020,687 + Sama_1655 0.87 +0.4
2,020,687 + Sama_1655 0.87 +0.0
2,020,688 - Sama_1655 0.87 -1.1
2,020,776 + +0.3
2,020,882 + +0.0
2,020,972 + -2.4
2,020,972 + -0.3
2,020,973 - -0.5
2,020,986 + -0.4
2,020,987 - -0.2
2,021,006 + +0.5
2,021,007 - +0.0
2,021,042 + -0.4
2,021,042 + +0.4
2,021,043 - +0.3
2,021,043 - +0.5
2,021,046 + -0.4
2,021,086 + +0.5
2,021,090 + -0.3
2,021,130 + +1.0
2,021,130 + -0.2
2,021,131 - -0.1
2,021,199 + -0.7
2,021,200 - -0.3
2,021,237 + -0.2
2,021,237 + -1.1
2,021,238 - +0.2
2,021,238 - -0.2
2,021,241 + +0.3
2,021,241 + +0.5
2,021,241 + -0.3
2,021,242 - +2.0
2,021,242 - -0.0
2,021,242 - +0.5
2,021,242 - +1.5
2,021,309 + Sama_1656 0.12 -1.5
2,021,309 + Sama_1656 0.12 -1.4
2,021,384 + Sama_1656 0.15 -0.1
2,021,385 - Sama_1656 0.15 -0.8
2,021,385 - Sama_1656 0.15 +0.0
2,021,404 - Sama_1656 0.16 +0.0
2,021,404 - Sama_1656 0.16 +0.4
2,021,632 - Sama_1656 0.26 +0.7
2,021,632 - Sama_1656 0.26 -1.3
2,021,689 - Sama_1656 0.28 -2.1
2,021,689 - Sama_1656 0.28 +0.5
2,021,690 + Sama_1656 0.28 -0.8
2,021,691 - Sama_1656 0.28 +1.3
2,021,691 - Sama_1656 0.28 -0.4
2,021,722 + Sama_1656 0.29 -0.5
2,021,727 + Sama_1656 0.29 +0.3
2,021,750 + Sama_1656 0.30 +1.0
2,021,750 + Sama_1656 0.30 -0.1
2,021,750 + Sama_1656 0.30 +0.3
2,021,751 - Sama_1656 0.30 +0.2
2,021,771 + Sama_1656 0.31 -0.7

Or see this region's nucleotide sequence