Strain Fitness in Shewanella amazonensis SB2B around Sama_1360

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,648,696	+		Sama_1359	0.56	-1.6
1,648,738	-		Sama_1359	0.58	+0.7
1,648,914	-		Sama_1359	0.67	+0.1
1,648,914	-		Sama_1359	0.67	+0.5
1,648,914	-		Sama_1359	0.67	-0.1
1,648,977	-		Sama_1359	0.70	-1.2
1,648,996	-		Sama_1359	0.71	+0.4
1,649,050	-		Sama_1359	0.74	+0.5
1,649,073	+		Sama_1359	0.75	-0.4
1,649,073	+		Sama_1359	0.75	+0.2
1,649,073	+		Sama_1359	0.75	-0.1
1,649,112	+		Sama_1359	0.77	-1.0
1,649,112	+		Sama_1359	0.77	+0.0
1,649,113	-		Sama_1359	0.77	+1.4
1,649,337	-		Sama_1359	0.88	-0.1
1,649,382	+				+0.2
1,649,402	+				-0.2
1,649,402	+				+0.2
1,649,403	-				-0.2
1,649,487	-				-0.4
1,649,502	+				-1.2
1,649,503	-				-0.0
1,649,563	+				-0.7
1,649,564	-				+0.1
1,649,593	-				+0.2
1,649,729	+		Sama_1360	0.17	+0.1
1,649,729	+		Sama_1360	0.17	-0.8
1,649,730	-		Sama_1360	0.17	-0.8
1,649,752	+		Sama_1360	0.19	+0.7
1,649,752	+		Sama_1360	0.19	-0.3
1,649,752	+		Sama_1360	0.19	-0.8
1,649,797	+		Sama_1360	0.25	-1.4
1,649,852	+		Sama_1360	0.31	-0.3
1,649,852	+		Sama_1360	0.31	-0.0
1,649,852	+		Sama_1360	0.31	-0.3
1,649,853	-		Sama_1360	0.32	-0.6
1,649,853	-		Sama_1360	0.32	+0.9
1,649,853	-		Sama_1360	0.32	-0.2
1,649,902	+		Sama_1360	0.37	+0.2
1,649,902	+		Sama_1360	0.37	-0.5
1,649,903	-		Sama_1360	0.38	+0.2
1,649,904	+		Sama_1360	0.38	+0.6
1,649,904	+		Sama_1360	0.38	+0.4
1,649,905	-		Sama_1360	0.38	-0.8
1,649,905	-		Sama_1360	0.38	+0.2
1,649,943	+		Sama_1360	0.42	-0.5
1,649,951	-		Sama_1360	0.43	+0.2
1,650,071	+		Sama_1360	0.58	-0.2
1,650,226	+		Sama_1360	0.76	-0.3
1,650,226	+		Sama_1360	0.76	-1.8
1,650,226	+		Sama_1360	0.76	-0.1
1,650,226	+		Sama_1360	0.76	-0.2
1,650,226	+		Sama_1360	0.76	-2.8
1,650,227	-		Sama_1360	0.77	+0.2
1,650,227	-		Sama_1360	0.77	-1.4
1,650,236	+		Sama_1360	0.78	+0.7
1,650,236	+		Sama_1360	0.78	-0.1
1,650,289	+		Sama_1360	0.84	+2.0
1,650,332	+		Sama_1360	0.89	+0.4
1,650,333	-		Sama_1360	0.89	+0.5
1,650,343	-				-0.0
1,650,343	-				-0.3
1,650,358	+				-0.5
1,650,358	+				+0.7
1,650,359	-				-1.0
1,650,421	+				-0.8
1,650,421	+				+0.7
1,650,422	-				+1.3
1,650,433	+				-0.3
1,650,433	+				+1.4
1,650,434	-				+0.4
1,650,434	-				-0.4
1,650,434	-				-0.0
1,650,489	+				-0.5
1,650,504	+				-0.2
1,650,505	-				+0.8
1,650,565	+				-1.1
1,650,566	-				+0.0
1,650,586	+				+0.4
1,650,665	+		Sama_1361	0.14	-0.3
1,650,665	+		Sama_1361	0.14	-0.1
1,650,666	-		Sama_1361	0.15	+0.3
1,650,666	-		Sama_1361	0.15	+0.4
1,650,746	+		Sama_1361	0.20	+2.0
1,650,775	+		Sama_1361	0.21	-0.3
1,650,776	-		Sama_1361	0.21	+0.3
1,650,780	-		Sama_1361	0.22	-0.5
1,650,791	-		Sama_1361	0.22	-0.1
1,651,014	+		Sama_1361	0.36	-0.2
1,651,015	-		Sama_1361	0.36	-0.1
1,651,015	-		Sama_1361	0.36	+1.5
1,651,072	+		Sama_1361	0.40	+0.7
1,651,072	+		Sama_1361	0.40	-0.4
1,651,072	+		Sama_1361	0.40	-1.2
1,651,073	-		Sama_1361	0.40	-0.0
1,651,148	+		Sama_1361	0.45	-0.3
1,651,149	-		Sama_1361	0.45	-1.1
1,651,149	-		Sama_1361	0.45	-0.9
1,651,164	+		Sama_1361	0.46	-0.4
1,651,165	-		Sama_1361	0.46	+0.2
1,651,171	+		Sama_1361	0.46	-0.1
1,651,171	+		Sama_1361	0.46	-0.2
1,651,172	-		Sama_1361	0.46	-0.2
1,651,189	+		Sama_1361	0.47	+0.3
1,651,190	-		Sama_1361	0.47	-0.5
1,651,190	-		Sama_1361	0.47	+0.5
1,651,242	-		Sama_1361	0.50	+0.4
1,651,252	-		Sama_1361	0.51	+0.8
1,651,329	+		Sama_1361	0.56	+0.7
1,651,329	+		Sama_1361	0.56	+0.3
1,651,330	-		Sama_1361	0.56	+0.9
1,651,330	-		Sama_1361	0.56	+0.1
1,651,330	-		Sama_1361	0.56	+0.5
1,651,330	-		Sama_1361	0.56	-0.3