Strain Fitness in Shewanella amazonensis SB2B around Sama_1358

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,645,745	+		Sama_1356	0.84	+1.0
1,645,745	+		Sama_1356	0.84	-1.0
1,645,745	+		Sama_1356	0.84	-0.2
1,645,745	+		Sama_1356	0.84	-1.8
1,645,745	+		Sama_1356	0.84	+0.5
1,645,745	+		Sama_1356	0.84	-0.2
1,645,745	+		Sama_1356	0.84	+0.2
1,645,745	+		Sama_1356	0.84	+0.5
1,645,745	+		Sama_1356	0.84	+1.0
1,645,745	+		Sama_1356	0.84	+0.1
1,645,746	-		Sama_1356	0.84	+0.6
1,645,746	-		Sama_1356	0.84	+0.5
1,645,746	-		Sama_1356	0.84	+0.2
1,645,746	-		Sama_1356	0.84	+0.4
1,645,746	-		Sama_1356	0.84	-0.2
1,645,746	-		Sama_1356	0.84	-0.6
1,645,746	-		Sama_1356	0.84	-1.1
1,645,746	-		Sama_1356	0.84	+0.2
1,645,746	-		Sama_1356	0.84	+1.8
1,645,746	-		Sama_1356	0.84	+1.3
1,645,746	-		Sama_1356	0.84	+0.8
1,645,762	-		Sama_1356	0.87	-0.1
1,645,778	-		Sama_1356	0.89	+0.4
1,645,778	-		Sama_1356	0.89	-0.0
1,645,778	-		Sama_1356	0.89	+0.7
1,645,783	+				+0.7
1,645,783	+				+1.1
1,645,784	-				-0.1
1,645,784	-				+0.2
1,645,784	-				-0.8
1,645,787	+				-0.4
1,645,787	+				-0.3
1,645,787	+				-0.2
1,645,787	+				-0.5
1,645,788	-				+0.0
1,645,788	-				+0.5
1,645,788	-				+0.9
1,645,788	-				+0.0
1,645,791	-				-0.8
1,645,800	+				-0.7
1,645,800	+				-0.3
1,645,889	-				-0.8
1,645,926	+				+0.4
1,645,926	+				+0.9
1,645,926	+				+0.5
1,645,927	-				+0.7
1,645,945	+		Sama_1357	0.12	-0.3
1,645,945	+		Sama_1357	0.12	-0.6
1,645,946	-		Sama_1357	0.12	-0.1
1,645,946	-		Sama_1357	0.12	+0.2
1,646,130	+		Sama_1357	0.39	-1.2
1,646,130	+		Sama_1357	0.39	+0.3
1,646,266	+		Sama_1357	0.58	+0.1
1,646,322	+		Sama_1357	0.66	+0.6
1,646,322	+		Sama_1357	0.66	-0.5
1,646,323	-		Sama_1357	0.66	+0.4
1,646,323	-		Sama_1357	0.66	+0.8
1,646,323	-		Sama_1357	0.66	+1.1
1,646,323	-		Sama_1357	0.66	+2.0
1,646,433	-		Sama_1357	0.82	-0.3
1,646,462	-		Sama_1357	0.86	-0.1
1,646,488	+		Sama_1357	0.90	+0.4
1,646,488	+		Sama_1357	0.90	+0.0
1,646,488	+		Sama_1357	0.90	+0.5
1,646,489	-		Sama_1357	0.90	-1.8
1,646,497	+				+0.1
1,646,497	+				-0.1
1,646,497	+				+0.4
1,646,497	+				+1.2
1,646,498	-				+1.2
1,646,498	-				-0.3
1,646,498	-				-0.3
1,646,498	-				+1.2
1,646,529	+				-0.8
1,646,529	+				+0.6
1,646,529	+				-0.9
1,646,547	+				+1.8
1,646,547	+				-1.0
1,646,547	+				+0.8
1,646,548	-				+0.8
1,646,580	+				+1.1
1,646,580	+				-0.3
1,646,581	-				+0.5
1,646,581	-				-0.1
1,646,581	-				-0.2
1,646,615	+				+0.2
1,646,644	+				-0.4
1,646,648	+				-0.9
1,646,648	+				+1.5
1,646,648	+				-1.4
1,646,648	+				+1.1
1,646,649	-				-0.8
1,646,649	-				-0.1
1,646,649	-				-1.8
1,646,649	-				+0.1
1,646,649	-				-0.7
1,646,649	-				-1.2
1,646,649	-				+0.2
1,646,649	-				-0.2
1,646,649	-				+0.2
1,646,649	-				-0.6
1,646,649	-				+0.5
1,646,649	-				+0.6
1,646,655	-				-0.4
1,646,668	+				+0.2
1,646,668	+				+1.7
1,646,669	-				-0.0
1,646,748	-				-2.8
1,646,769	+		Sama_1358	0.11	-2.4
1,646,770	-		Sama_1358	0.12	-1.4
1,646,789	+		Sama_1358	0.14	-0.8
1,646,789	+		Sama_1358	0.14	+1.6
1,646,789	+		Sama_1358	0.14	-1.4
1,646,789	+		Sama_1358	0.14	-1.3
1,646,789	+		Sama_1358	0.14	-2.1
1,646,789	+		Sama_1358	0.14	+0.2
1,646,790	-		Sama_1358	0.14	-2.4
1,646,791	+		Sama_1358	0.14	+0.5
1,646,791	+		Sama_1358	0.14	-0.8
1,646,791	+		Sama_1358	0.14	-1.1
1,646,792	-		Sama_1358	0.14	+0.7
1,646,907	-		Sama_1358	0.27	-1.9
1,646,926	+		Sama_1358	0.29	+0.5
1,646,926	+		Sama_1358	0.29	-0.5
1,646,927	-		Sama_1358	0.29	+0.2
1,647,100	-		Sama_1358	0.49	+1.8
1,647,112	+		Sama_1358	0.50	-3.3
1,647,267	+		Sama_1358	0.67	-1.0
1,647,356	+		Sama_1358	0.77	+1.2
1,647,357	-		Sama_1358	0.77	-0.1
1,647,428	+		Sama_1358	0.85	-0.2
1,647,429	-		Sama_1358	0.86	-2.6
1,647,436	-		Sama_1358	0.86	-0.8
1,647,622	-				-0.1
1,647,622	-				-1.0
1,647,622	-				-0.1
1,647,689	-				-0.6
1,647,689	-				-1.8
1,647,689	-				+0.2
1,647,689	-				+0.7
1,647,695	+				+1.5
1,647,696	-				-0.4
1,647,696	-				-0.7
1,647,696	-				-0.0
1,647,805	-		Sama_1359	0.12	+0.4
1,647,861	-		Sama_1359	0.15	+1.2
1,647,907	+		Sama_1359	0.17	+0.4
1,647,908	-		Sama_1359	0.17	-0.8
1,647,908	-		Sama_1359	0.17	+0.2
1,647,945	+		Sama_1359	0.19	+0.2
1,647,946	-		Sama_1359	0.19	+0.8
1,647,973	+		Sama_1359	0.20	-0.0
1,647,973	+		Sama_1359	0.20	+0.7
1,647,973	+		Sama_1359	0.20	+0.4
1,647,973	+		Sama_1359	0.20	+0.2
1,647,993	+		Sama_1359	0.21	+0.4
1,647,993	+		Sama_1359	0.21	-1.0
1,648,007	+		Sama_1359	0.22	+0.6
1,648,094	-		Sama_1359	0.26	+1.2
1,648,168	+		Sama_1359	0.30	-0.2
1,648,332	+		Sama_1359	0.38	+0.2
1,648,369	-		Sama_1359	0.40	-0.2
1,648,433	+		Sama_1359	0.43	-0.6
1,648,434	-		Sama_1359	0.43	+1.8
1,648,545	+		Sama_1359	0.49	-0.3