Strain Fitness in Shewanella oneidensis MR-1 around SO_A0111

Experiment: 5-Hydroxymethylfurfural 15 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSOA0110 and SO_A0111 are separated by 60 nucleotidesSO_A0111 and SOA0112 are separated by 88 nucleotides SOA0110: SOA0110 - lipoprotein, putative (NCBI ptt file), at 90,085 to 94,311 SOA0110 SO_A0111: SO_A0111 - no description, at 94,372 to 94,513 _A0111 SOA0112: SOA0112 - lipoprotein, putative (NCBI ptt file), at 94,602 to 98,834 SOA0112 Position (kb) 94 95Strain fitness (log2 ratio) -1 0 1at 93.496 kb on + strand, within SOA0110at 93.532 kb on - strand, within SOA0110at 93.722 kb on + strand, within SOA0110at 93.876 kb on - strand, within SOA0110at 93.902 kb on + strandat 93.902 kb on + strandat 93.929 kb on - strandat 94.028 kb on + strandat 94.028 kb on + strandat 94.360 kb on + strandat 94.417 kb on - strand, within SO_A0111

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 15 mM
remove
93,496 + SOA0110 0.81 -0.3
93,532 - SOA0110 0.82 +0.6
93,722 + SOA0110 0.86 +0.7
93,876 - SOA0110 0.90 +0.3
93,902 + +0.7
93,902 + +0.6
93,929 - +0.6
94,028 + -0.1
94,028 + +0.0
94,360 + +0.2
94,417 - SO_A0111 0.32 +0.8

Or see this region's nucleotide sequence