Experiment: 5-Hydroxymethylfurfural 15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO3704 and SO3705 are separated by 880 nucleotides SO3705 and SO3706 are separated by 117 nucleotides
SO3704: SO3704 - hypothetical protein (NCBI ptt file), at 3,853,315 to 3,853,539
SO3704
SO3705: SO3705 - 5-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosidase, putative (NCBI ptt file), at 3,854,420 to 3,855,205
SO3705
SO3706: SO3706 - NupC family protein (NCBI ptt file), at 3,855,323 to 3,856,591
SO3706
Position (kb)
3854
3855
3856 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3853.436 kb on + strand, within SO3704 at 3853.515 kb on + strand, within SO3704 at 3853.515 kb on + strand, within SO3704 at 3853.770 kb on + strand at 3853.946 kb on - strand at 3853.956 kb on - strand at 3854.009 kb on + strand at 3854.102 kb on - strand at 3854.153 kb on - strand at 3854.359 kb on - strand at 3854.361 kb on - strand at 3854.390 kb on - strand at 3854.496 kb on - strand at 3854.611 kb on - strand, within SO3705 at 3854.667 kb on - strand, within SO3705 at 3854.700 kb on + strand, within SO3705 at 3854.754 kb on + strand, within SO3705 at 3854.754 kb on + strand, within SO3705 at 3854.775 kb on + strand, within SO3705 at 3854.783 kb on + strand, within SO3705 at 3854.869 kb on + strand, within SO3705 at 3855.010 kb on - strand, within SO3705 at 3855.187 kb on + strand at 3855.221 kb on - strand at 3855.255 kb on - strand at 3855.302 kb on + strand at 3855.313 kb on + strand at 3855.321 kb on - strand at 3855.321 kb on - strand at 3855.399 kb on - strand at 3855.420 kb on + strand at 3855.460 kb on + strand, within SO3706 at 3855.468 kb on - strand, within SO3706 at 3855.529 kb on + strand, within SO3706 at 3855.589 kb on + strand, within SO3706 at 3855.742 kb on + strand, within SO3706 at 3855.743 kb on + strand, within SO3706 at 3855.786 kb on + strand, within SO3706 at 3855.810 kb on + strand, within SO3706 at 3855.865 kb on + strand, within SO3706 at 3856.189 kb on - strand, within SO3706
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 15 mM remove 3,853,436 + SO3704 0.54 +0.4 3,853,515 + SO3704 0.89 -0.4 3,853,515 + SO3704 0.89 +0.8 3,853,770 + -0.2 3,853,946 - -0.1 3,853,956 - -0.5 3,854,009 + -0.1 3,854,102 - -0.6 3,854,153 - +0.2 3,854,359 - +0.7 3,854,361 - -0.3 3,854,390 - -0.1 3,854,496 - +2.5 3,854,611 - SO3705 0.24 +0.6 3,854,667 - SO3705 0.31 -0.1 3,854,700 + SO3705 0.36 +0.3 3,854,754 + SO3705 0.42 +0.8 3,854,754 + SO3705 0.42 -0.1 3,854,775 + SO3705 0.45 +0.3 3,854,783 + SO3705 0.46 +0.7 3,854,869 + SO3705 0.57 +1.8 3,855,010 - SO3705 0.75 +0.6 3,855,187 + -0.5 3,855,221 - -0.1 3,855,255 - -0.1 3,855,302 + +0.2 3,855,313 + +0.4 3,855,321 - +0.7 3,855,321 - +0.5 3,855,399 - +0.1 3,855,420 + -0.6 3,855,460 + SO3706 0.11 -0.7 3,855,468 - SO3706 0.11 -0.4 3,855,529 + SO3706 0.16 -0.2 3,855,589 + SO3706 0.21 +0.3 3,855,742 + SO3706 0.33 -1.1 3,855,743 + SO3706 0.33 +0.3 3,855,786 + SO3706 0.36 +0.1 3,855,810 + SO3706 0.38 -2.1 3,855,865 + SO3706 0.43 +0.3 3,856,189 - SO3706 0.68 -1.3
Or see this region's nucleotide sequence