Strain Fitness in Shewanella oneidensis MR-1 around SO2634

Experiment: 5-Hydroxymethylfurfural 15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttrmU and SO2634 are separated by 3 nucleotidesSO2634 and purB are separated by 29 nucleotides SO2633: trmU - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (NCBI ptt file), at 2,768,717 to 2,769,835 trmU SO2634: SO2634 - conserved hypothetical protein (NCBI ptt file), at 2,769,839 to 2,770,456 SO2634 SO2635: purB - adenylosuccinate lyase (NCBI ptt file), at 2,770,486 to 2,771,856 purB Position (kb) 2769 2770 2771Strain fitness (log2 ratio) -1 0 1at 2770.021 kb on + strand, within SO2634at 2770.364 kb on + strand, within SO2634at 2770.371 kb on + strand, within SO2634at 2770.421 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 15 mM
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2,770,021 + SO2634 0.29 +0.4
2,770,364 + SO2634 0.85 +0.7
2,770,371 + SO2634 0.86 +0.2
2,770,421 + +0.6

Or see this region's nucleotide sequence